| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1362001 = | 20 (1.000) | 6 (0.350) | 4/114 | 1.4 | 28.4% | coding (91/558 nt) | puuR | repressor for the divergent puu operons, putrescine inducible |
| ? | NC_000913 | 1362051 = | 13 (0.760) | coding (141/558 nt) | puuR | repressor for the divergent puu operons, putrescine inducible | |||||
GCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCTGCAAAAGCTGCTGAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCG > NC_000913/1361986‑1362115 | gccgccGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGc < 1:1678/68‑1 (MQ=255)agcgtactgatggcaGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGc < 1:465013‑M1/53‑1 (MQ=255) cgtactgatggcagggctgactttatcttgttctatcgtactgatagcactgtgagccagcccTGCCa < 2:284174‑M2/5‑1 (MQ=255) cgccgAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCa > 1:137799/1‑68 (MQ=255) aaCTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGt < 2:373550/68‑1 (MQ=255) tggcaGGGCTGGCTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACg < 2:284174‑M1/63‑1 (MQ=255) tcCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCt < 1:622838/68‑1 (MQ=255) gcagggctgactttatcttgttctatcgtactgatagcactgtgagtcagcccTGCCATCAGTACGCt < 1:465013‑M2/15‑1 (MQ=255) TGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCTGCAAAAg > 1:234326‑M1/1‑68 (MQ=255) TGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCTGCAAAAg > 1:183326‑M1/1‑68 (MQ=255) gTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCTGCAAAAGCTGCTGAAg > 2:17687/1‑68 (MQ=255) ttgttctatcgtactgatagcactgtgagtcagcccTGCCATCAGTACGCTGCAAAAGCTGCTGAAgg > 1:526832‑M2/37‑68 (MQ=255) ttgttctatcgtactgatagcactgtgagtcagcccTGCCATCAGTACGCTGCAAAAGCTGCTGAAgg > 1:527499‑M2/37‑68 (MQ=255) cTATCAGTACGATAGATCAAGATAAAGTCAGCCCTGCCATCAGTTCGCTGCTAAAGCTGCTGAAGgtg < 1:33217/68‑1 (MQ=255) aTCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCTGCAAAAGCTGCTGAAGGTGTa > 1:332555/1‑68 (MQ=255) aTCAGTACGATAGAACAAGATAAAGTCAGAACTGCCATCAGTACGCTGCAAAAGCTGCTGAAGGtata > 2:137457/1‑68 (MQ=255) cAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCTGCAAAAGCTGCTGAAGGTGTATg > 2:384030/1‑68 (MQ=255) gtAGGACAAGATAAAGTCAGCCCTGCCATCAGTACGCTGCAAAAGCTGCTGAAGGTGTATGGTCTGTc > 1:511534/2‑68 (MQ=255) aTAGAACAAGATAAAGTCAGCACTGCAATAAGTACGCTGCAAAAGCAGCAGAAGGTGTATGGTCTGTc > 2:528532/1‑68 (MQ=255) aCAAGATAAAGTCAGCCCTGCCATCAGTACGCTGCAAAAGCTGCTGAAGGTGTATGGTCTGTCActct > 2:618315/1‑68 (MQ=255) aCAAGATAAAGTCAGCCCTGCCATCAGTACGCTGCAAAAGCTGCTGAAGGTGTATGGTCTGTCActct > 2:188077/1‑68 (MQ=255) gtgagtcagcccTGCCATCAGTACGCTGCAAAAGCTGCTGAAGGTGTATGGTCTGTCACTCTCGGAAt < 2:526833‑M2/56‑1 (MQ=255) gtgagtcagcccTGCCATCAGTACGCTGCAAAAGCTGCTGAAGGTGTATGGTCTGTCACTCTCGGAAt < 2:527500‑M2/56‑1 (MQ=255) gtcagcccTGCCATCAGTACGCTGCAAAAGCTGCTGAAGGTGTATGGTCTGTCACTCTCGGAATTCtt > 1:727200‑M2/9‑68 (MQ=255) tcagcccTGCCATCAGTACGCTGCAAAAGCTGCTGAAGGTGTATGGTCTGTCACTCTCGGAATTCttt > 2:140023‑M2/8‑68 (MQ=255) tcagcccTGCCATCAGTACGCTGCAAAAGCTGCTGAAGGTGTATGGTCTGTCACTCTCGGAATTCttt > 1:476829‑M2/8‑68 (MQ=255) cccTGCCATCAGTACGCTGCAAAAGCTGCTGAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCg > 2:461918‑M2/4‑68 (MQ=255) | GCCGCCGAACTCTCCGGGCTGACTCACAGTGCTATCAGTACGATAGAACAAGATAAAGTCAGCCCTGCCATCAGTACGCTGCAAAAGCTGCTGAAGGTGTATGGTCTGTCACTCTCGGAATTCTTTTCCG > NC_000913/1361986‑1362115 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |