| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1683535 = | 20 (1.000) | 4 (0.230) | 3/114 | 1.7 | 24.1% | coding (654/1302 nt) | rstB | sensory histidine kinase of RstAB two‑component system |
| ? | NC_000913 | 1683597 = | 8 (0.470) | coding (716/1302 nt) | rstB | sensory histidine kinase of RstAB two‑component system | |||||
TCGCATTTAACCAGATGGCGGACAATATCAACGCCTTAATTGCCAGCAAAAAACAGCTTATTGACGGTATCGCTCACGAACTGCGAACACCGTTAGTGCGCCTGCGTTATCGACTGGAGATGAGCGATA > NC_000913/1683468‑1683596 | tcttcaattaaagcttcaagttgactgatatcacgattcaacgcctgggattcggcggcgctcaggtt < 2:51660‑M1/1‑1 (MQ=255) tcaattaaagcttcaagttgactgatatcacgattcaacgcctgggattcggcggcgctcaggtTATc > 1:496477‑M1/65‑68 (MQ=255) attaaagcttcaagttgactgatatcacgattcaacgcctgggattcggcggcgctcaggtTATCGCt > 2:404748‑M1/62‑68 (MQ=255) ataaaagcttcaagttgactgaaatcacgattcaacgactgggattcggcggcgctcaggaTATCgca < 2:500702‑M1/7‑2 (MQ=255) aCCAGATGGCGGACAATATCAACGCCTTAATTGCCAGCAAAAAACAGCTTATTGACGGTATCGCTCAc > 1:362878/1‑68 (MQ=255) ccAGATGGCGGACAATATCAACGCCTTAATTGCCAGCAAAAAACAGCTTATTGACGGTATCGCTCACg < 2:87118/68‑1 (MQ=255) ccAGATGGCGGACAATATCAACGCCTTAATTGCCAGCAAAAAACAGCTTATTGACGGTATCGCTCACg > 2:560450/1‑68 (MQ=255) agcttcaagttgactgatatcacgattcaacgcctgggattcggcggcgctcaggtTATCGCt > 1:35123‑M1/57‑63 (MQ=255) agcttcaagttgactgatatcacgattcaacgcctgggattcggcggcgctcaggtTATCGCt < 2:35123‑M1/7‑1 (MQ=255) aaTATCAACGCCTTAATTGCCAGCAAAAAACAGCTTATTGACGGTATCGCTCACGAACTGCGAACAcc < 2:456956/68‑1 (MQ=255) tCAACGCCTTAATTGCCAGCAAAAAACAGCTTATTGGCGGTATCGCTCACGGACTGCGAACACCGTTa > 2:527592/1‑68 (MQ=255) aaCGCATTAATAGCCAGCAAAAAACAGCTTATTGACGGTATCGCTCACGAACTGCGAACACCGTTAGt > 2:93291/1‑68 (MQ=255) cGCCTTAATTGCCAGCAAAAAACAGCTTATTGACGGTATCGCTCACGAACTGCGAACACCGTTAGTgc < 2:463812/68‑1 (MQ=255) cGCCTTAATTGCCAGCAAAAAACAGCTTATTGACGGTATCGCTCACGAACTGCGAACACCGTTAGTgc > 1:488594/1‑68 (MQ=255) gCCTTAATTGCCAGCAAAAAACAGCTTATTGACGGTATCGCTCACGAACTGCGAACACCGTTAGTgcg > 2:387890/1‑68 (MQ=255) cgattcaacgcctgggattcggcggcgctcaggtTATCGCTCACGAACTGCGAACACCGTTAGTgc < 1:742927‑M1/32‑1 (MQ=255) cgattcaacgcctgggattcggcggcgcgcaggtTATCGCTCACGAACTGCGAACACCGTTAGTgc > 2:742928‑M1/35‑66 (MQ=255) attcaacgcctgggattcggcggcgctcaggtTATCGCTCACGAACTGCGAACACCGTTagtgcgact < 1:715289‑M1/36‑4 (MQ=255) aaTTGCCAGCAAAAAACAGCTTATTGACGGTATCGCTCACGAACTGCGAACACCGTTAGTGCGCCTGc < 2:137934/68‑1 (MQ=255) tgggattcggcggcgcgcaggtTATCTCTCACGAACTGCGATCACCGTTAGTGCGCCTGCGTTATCGa > 2:715290‑M1/23‑68 (MQ=255) gCAAAACACAGCTTATTGACGGTATCGCTCACGAACTGCGAACACCGTTAGTGCGCCTGCGTTATCGa < 1:575871/68‑1 (MQ=255) gCAAAAAACAGCTTATTGACGGTATCGCTCACGAACTGCGAACACCGTTAGTGCGCCTGCGTTATCGa < 2:265229/68‑1 (MQ=255) gCAAAAAACAGCTTATTGACGGTATCGCTCACGAACTGCGAACACCGTTAGTGCGCCTGCGTTATCGa < 1:256215/68‑1 (MQ=255) aCAGCTTATTGACGGTATCGCTCACGAACTGCGAACAcc > 1:506348/1‑39 (MQ=255) aCAGCTTATTGACGGTATCGCTCACGAACTGCGAACAcc < 2:506349/39‑1 (MQ=255) aCAGCTTATTGACGGTATCGCTCACGAACTGCGAACACCGTTAGTGCGCCTGCGTTATCGACTGgaga > 2:428854/1‑68 (MQ=255) ttATTGACGGTATCGCTCACTAACTGCGAACACCGTTAGTGCGCCTGCGTTATCGACTGGAGATGAGc < 1:268812/68‑1 (MQ=255) tGACGGTATCGCTCACGAACTGCGAACACCGTTAGTGCGCCTGCGTTATCGACTGGAGATGAGCGATa < 2:80530/68‑1 (MQ=255) gTATCGCTCACGAACTGCGAACACCGTTAGTGCGCCTGCGTTATCGa > 1:724957/1‑47 (MQ=255) gTATCGCTCACGAACTGCGAACACCGTTAGTGCGCCTGCGTTATCGa < 2:724958/47‑1 (MQ=255) | TCGCATTTAACCAGATGGCGGACAATATCAACGCCTTAATTGCCAGCAAAAAACAGCTTATTGACGGTATCGCTCACGAACTGCGAACACCGTTAGTGCGCCTGCGTTATCGACTGGAGATGAGCGATA > NC_000913/1683468‑1683596 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |