| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,978,503 | Δ776 bp | insB1–insA | insB1, insA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1978503 | 1979278 | 776 | 30 [0] | [0] 29 | insB1–insA | insB1,insA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 26 (1.480) | 19/116 | 0.0 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
GGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAG > NC_000913/1978435‑1978568 | ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG > 2:197806‑M1/1‑68 (MQ=255) gggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGt < 2:155456‑M1/68‑2 (MQ=255) gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataa < 2:277503‑M1/68‑6 (MQ=255) cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataag < 2:407118‑M1/68‑7 (MQ=255) ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt > 2:373282‑M1/1‑50 (MQ=255) ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt > 1:748164‑M1/1‑50 (MQ=255) cGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggg < 1:598146‑M1/68‑25 (MQ=255) gcgatGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt < 2:392499‑M1/66‑26 (MQ=255) aTGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgta < 2:214646‑M1/68‑29 (MQ=255) tGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtat < 2:710744‑M1/68‑30 (MQ=255) gCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatt > 1:64392‑M1/1‑38 (MQ=255) gCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatt < 1:373281‑M1/68‑31 (MQ=255) tCACACAAAACGCTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaat > 1:579608‑M1/1‑33 (MQ=255) acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt > 1:86882‑M1/1‑29 (MQ=255) aaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaa < 2:514027‑M1/68‑43 (MQ=255) acacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaa > 2:671135‑M1/1‑24 (MQ=255) acacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaa > 2:671021‑M1/1‑24 (MQ=255) cacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt < 2:333148‑M1/48‑26 (MQ=255) cacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt > 1:333148‑M1/1‑23 (MQ=255) cAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttt > 2:721521‑M1/1‑19 (MQ=255) ttACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttc < 1:519809‑M1/68‑53 (MQ=255) aCTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgc > 1:715437‑M1/1‑14 (MQ=255) aCTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgc > 2:745017‑M1/1‑14 (MQ=255) aCTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgc > 1:290514‑M1/1‑14 (MQ=255) aCTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgc > 2:327930‑M1/1‑14 (MQ=255) ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgcta > 1:128447‑M1/1‑12 (MQ=255) ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgcta > 1:583933‑M1/1‑12 (MQ=255) aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta > 2:156613‑M1/1‑7 (MQ=255) aTAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgcta > 1:576399‑M1/1‑7 (MQ=255) tGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagcttttcgctacgctagcaag > 1:236953‑M1/1‑2 (MQ=255) | GGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAG > NC_000913/1978435‑1978568 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |