| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 1,978,503 | Δ776 bp | insB1–insA | insB1, insA | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1978503 | 1979278 | 776 | 30 [0] | [0] 29 | insB1–insA | insB1,insA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 26 (1.480) | 19/116 | 0.0 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
CCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAG > NC_000913/1979212‑1979344 | gggggctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgt < 2:155456‑M2/1‑1 (MQ=255) gctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATaa < 2:277503‑M2/5‑1 (MQ=255) ctgcgattttcaataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAg < 2:407118‑M2/6‑1 (MQ=255) ataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgt > 2:373282‑M2/51‑68 (MQ=255) ataatgcgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACttttgt > 1:748164‑M2/51‑68 (MQ=255) cgtgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTggg < 1:598146‑M2/24‑1 (MQ=255) gcgatgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt < 2:392499‑M2/25‑1 (MQ=255) atgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTa < 2:214646‑M2/28‑1 (MQ=255) tgcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAt < 2:710744‑M2/29‑1 (MQ=255) gcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAtt > 1:64392‑M2/39‑68 (MQ=255) gcagatcacacaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTAtt < 1:373281‑M2/30‑1 (MQ=255) tcacacaaaacgctcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAAt > 1:579608‑M2/34‑68 (MQ=255) acaaaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGt > 1:86882‑M2/30‑68 (MQ=255) aaacactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaa < 2:514027‑M2/42‑1 (MQ=255) acactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaa > 2:671021‑M2/25‑68 (MQ=255) acactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTaaaa > 2:671135‑M2/25‑68 (MQ=255) cactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt > 1:333148‑M2/24‑48 (MQ=255) cactcaattacttaacataaatgTATAAGTCATACTTTTGTTTTGGgt < 2:333148‑M2/25‑1 (MQ=255) caattacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGttt > 2:721521‑M2/20‑68 (MQ=255) ttacttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTc < 1:519809‑M2/52‑1 (MQ=255) acttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgc > 2:745017‑M2/15‑68 (MQ=255) acttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgc > 2:327930‑M2/15‑68 (MQ=255) acttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgc > 1:715437‑M2/15‑68 (MQ=255) acttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgc > 1:290514‑M2/15‑68 (MQ=255) ttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgcta > 1:583933‑M2/13‑68 (MQ=255) ttaacataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgcta > 1:128447‑M2/13‑68 (MQ=255) ataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta > 2:156613‑M2/8‑68 (MQ=255) ataaatgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTcgctacgcta > 1:576399‑M2/8‑68 (MQ=255) tgTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGCTTTTCGCTACGCTagcaag > 1:236953‑M2/3‑68 (MQ=255) | CCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCCATAAATGTATAAGTCATACTTTTGTTTTGGGTGTATTTCAATCTGTTAAAAAGTTTTTCGCTACGCTAGCAAG > NC_000913/1979212‑1979344 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |