| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3614604 | 17 (0.850) | 5 (0.280) | 3/118 | 1.8 | 23.7% | coding (938/1575 nt) | nikA | nickel/heme ABC transporter periplasmic binding protein |
| ? | NC_000913 | = 3615035 | 17 (0.950) | coding (1369/1575 nt) | nikA | nickel/heme ABC transporter periplasmic binding protein | |||||
ATTACGCGGTAAACAAAAAATCGCTGATTGATAACGCGTTGTATGGCACCCAGCAGGTCGCCGACACCCTGTTTGCCCCTTCTGTGCCCTACGCCAACCTCGGCCTGAAACCGAGCCAGTACGATCCGCAA > NC_000913/3614541‑3614671 | aTTACGCGGTAAACAAAAAATCGCTGATTGATAACGCGTTGTATGGCACCCAGCAGGTCGCCGACAcc > 2:509709/1‑68 (MQ=255)aTTACGCGGTAAACAAAAAATCGCTGATTGATAACGCGTTGTATGGCACCCAGCAGGTCGCCGACAcc > 1:47419/1‑68 (MQ=255) tACGCGGTAAACAAAAAATCGCTGATTGATAACGCGTTGTATGGCACCCAGCAGGTCGCCGACACCCt > 1:373948/1‑68 (MQ=255) tACGCGGTAAACAAAAAATCGCTGATTGATAACGCGTTGTATGGCACCCAGCAGGTCGCCGACACCCt > 1:433568/1‑68 (MQ=255) ggTAAACAAAAAATCGCTGATTGATAACGCGTTGTATGGCACCCAGCAGGTCGCCGACACCCTGTTTg < 2:471150/68‑1 (MQ=255) gTAAACAAAAAATCTCTGATTGATAACGCGTTGTATGGCACCCAGCAGGTCGCCGAtctctttatcaa < 2:286623‑M1/68‑13 (MQ=255) gTAAACAAAAAATCGCTGATTGATAACGCGTTGTATGGCACCCAGCAGGTCGCCGAtctctttatcaa < 1:457339‑M1/68‑13 (MQ=255) aaaaaTCGCTGATTGATAACGCGTTGTATGGCACCCAGCAGGTCGCCGACACCCTGTTTGCCCCTTCt > 1:341466/1‑68 (MQ=255) aaaTCGCTGATTGATAACGCGTTGTATGGCACCCAGCAGGTCGCCGAtctctttatcaa < 1:358902‑M1/59‑13 (MQ=255) aaaTCGCTGATTGATAACGCGTTGTATGGCACCCAGCAGGTCGCCGAtctctttatcaa > 2:358903‑M1/1‑47 (MQ=255) aaaTCGCTGATTGATAACGCGTTGTATGGCACCCAGCAGGTCGCCGACACCCTGTTTGCCCCTTCtgt < 2:351207/68‑1 (MQ=255) aTCGCTGATTGATAACGCGTTGTATGGCACCCAGCAGGTCGCCGACACACTGTTTGCCCCTTCTGTGc > 2:703149/1‑68 (MQ=255) aaCGCGTTGTATGGCACCCAGCAGGTCGCCGAtctctttatcaatcagcggtttgtcggctaatcctt > 1:378879‑M1/1‑32 (MQ=255) cgTTGTATGGCACCCAGCAGGTCGCCGACACCCTGTTTGCCCCTTCTGTGCCCTACGCCAACCTCGGc > 1:526103/1‑68 (MQ=255) aTGGCACCCAGCAGGTCGCCGACACCCTGTTTGCCCCTTCTGTGCCCTACGCCAACCTCGGCCTGaaa > 1:687/1‑68 (MQ=255) gCACCCAGCAGGTCGCCGACACCCTGTTTGCCCCTTCTGTGCCCTACGCCAACCTCGGCCTGAAACCg > 1:280659/1‑68 (MQ=255) aCCCAGCAGGTCGCCGACACCCTGTTTGCCCCTTCTGTGCCCTGCGCCAACCTCGGCCTGAAGCCgcg > 1:702237/1‑66 (MQ=255) aCCCAGCAGGTCGCCGACACCCTGTTTGCCCCTTCTGTGCCCTACGCCAACCTCGGCCTGAAACCGAg > 2:296364/1‑68 (MQ=255) aCCCAGCAGGTCGCCGACACCCTGTTTGCCCCTTCTGTGCCCTACGCCAACCTCGGCCTGAAACCGAg < 2:544936/68‑1 (MQ=255) ggTCGCCGACACCCTGTTTGCCCCTTCTGTGCCCTACGCCAACCTCGGCCTGAAACCGAGCCAGTACg > 1:95130/1‑68 (MQ=255) gCCGAtctctttatcaatcagcggtttgtcggctaatccttgctgtgcctggaagtcagcgtgtgacg > 2:526104‑M1/1‑5 (MQ=255) gACACACTGTTTGCCCCTTCTGTGCCCTACGCCAACCTCGGCCTGAGACCGAGCCAGTACGATCCGCa > 1:747480/1‑68 (MQ=255) acacacTGTTTGAAACTTCTGTGCCCTACGCCAACCAAGGCCTGAAACCGAGCCAGTGCGATCCGCaa > 1:749101/1‑68 (MQ=255) | ATTACGCGGTAAACAAAAAATCGCTGATTGATAACGCGTTGTATGGCACCCAGCAGGTCGCCGACACCCTGTTTGCCCCTTCTGTGCCCTACGCCAACCTCGGCCTGAAACCGAGCCAGTACGATCCGCAA > NC_000913/3614541‑3614671 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |