| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3614604 | 17 (0.850) | 5 (0.280) | 3/118 | 1.8 | 23.7% | coding (938/1575 nt) | nikA | nickel/heme ABC transporter periplasmic binding protein |
| ? | NC_000913 | = 3615035 | 17 (0.950) | coding (1369/1575 nt) | nikA | nickel/heme ABC transporter periplasmic binding protein | |||||
CGTCACACGCTGACTTCCAGGCACAGCAAGGATTAGCCGACAAACCGCTGATTGATAAAGAGATCGGCGAAGTGCTGGCGACCCATGACGAAACGCAACGTCAGGCGCTGTATCGCGACATTCTGACCCG > NC_000913/3614973‑3615102 | cGTCACACGCTGACTTCCAGGCACAGCAAGGATTAGCCGACAAACCGCTGATTGATAAAGAGAtcggc > 2:526104‑M2/1‑63 (MQ=255) acGCTGACTTCCAGGCACAGCAAGGATTAGCCGACAAACCGCTGATTGATAAAGAGATCGGCGAAGTg > 2:680011/1‑68 (MQ=255) gCTGACTTCCAGGCACAGCAAGGATTAGCCGACAAACCGCTGATTGATAAAGAGATCGGCGAAGTGCt > 2:445467/1‑68 (MQ=255) gCACAGCAAGGATTAGCCGACAAACCGCTGATTGATAAAGAGATCGGCGAAGTGCTGGCGACCCATGa > 1:285782/1‑68 (MQ=255) gCACAGCAAGGATTAGCCGACAAACCGCTGATTGATAAAGAGATCGGCGAAGTGCTGGCGACCCATGa > 1:648956/1‑68 (MQ=255) aaGGATTAGCCGACAAACCGCTGATTGATAAAGAGAtcggcgacctgctgggtgccatacaacgcgtt > 1:378879‑M2/1‑36 (MQ=255) gATTAGCCGACAAACCGCTGATTGATAAAGAGATCGGCGAAGTGCTGGCGACCCATGAc > 1:472391/1‑59 (MQ=255) gATTAGCCGACAAACCGCTGATTGATAAAGAGATCGGCGAAGTGCTGGCGACCCATGAc < 2:472392/59‑1 (MQ=255) ccGCTGATTGATAAAGAGATCGGCGAAGTGCTGGCGACCCAAGACGAAACGCAACGTCAGGCGCTGTa < 2:622837/68‑1 (MQ=255) gCTGATTGATAAAGAGATCGGCGAAGTGCTGGCGACCCATGACGAAACGCAACGTCAGGCGCTGt < 1:506795/65‑1 (MQ=255) gCTGATTGATAAAGAGATCGGCGAAGTGCTGGCGACCCATGACGAAACGCAACGTCAGGCGCTGt > 2:506796/1‑65 (MQ=255) gattgatAAAGAGATCGGCGAAGTGCTGGCGACCCATGACGAAACGCAACGTCAGGCGCTGTATcgcg > 2:354186/1‑68 (MQ=255) ttgatAAAGAGAtcggcgacctgctgggtgccatacaacgcgttatcaatcagcgattttttgtttac < 1:457339‑M2/68‑57 (MQ=255) ttgatAAAGAGAtcggcgacctgctgggtgccatacaacgcgttatcaatcagcgattt > 2:358903‑M2/1‑12 (MQ=255) ttgatAAAGAGAtcggcgacctgctgggtgccatacaacgcgttatcaatcagcgattt < 1:358902‑M2/59‑48 (MQ=255) ttgatAAAGAGAtcggcgacctgctgggtgccatacaacgcgttatcaatcagagattttttgtttac < 2:286623‑M2/68‑57 (MQ=255) ttgatAAAGAGATCGGCGAAGTGCTGGCGACCCATGACGAAGCGCAACGTCAGGCGCTGGATCGGGAc > 1:308575/1‑68 (MQ=255) gatAAAGAGATCGGCGAAGTGCTGGCGACCCATGACGAAACGCAACGTCAGGCGCTGTATCGCGACAt < 1:220288/68‑1 (MQ=255) gatAAAGAGATCGGCGAAGTGCTGGCGACCCATGACGAAACGCAACGTCAGGCGCTGTATCGCGACAt > 2:244339/1‑68 (MQ=255) aaGAGATCGGCGAAGTGCTGGCGACCCATGACGAAACGCAACGTCAGGCGCTGTATCGCGACATTCTg > 1:750798/1‑68 (MQ=255) agagATCGGCGAAGTGCTGGCGACCCATGACGAAACGCAACGTCAGGCGCTGTATCGCGACATTCTgc > 2:605814/1‑67 (MQ=255) gaTCGGCGAAGTGCTGGCGCCCCATGACGAAACGCAACGTCAGGCGCTGTATCGCGACATTCTGAccc > 1:47094/1‑68 (MQ=255) aTCGGCGAAGTGCTGGCGACCCATGACGAAACGCAACGTCAGGCGCTGTATCGCGACATTCTGACCCg < 2:259402/68‑1 (MQ=255) | CGTCACACGCTGACTTCCAGGCACAGCAAGGATTAGCCGACAAACCGCTGATTGATAAAGAGATCGGCGAAGTGCTGGCGACCCATGACGAAACGCAACGTCAGGCGCTGTATCGCGACATTCTGACCCG > NC_000913/3614973‑3615102 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |