| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3798325 | 21 (1.050) | 8 (0.420) | 4/126 | 1.6 | 26.7% | coding (988/1074 nt) | waaU | lipopolysaccharide core biosynthesis |
| ? | NC_000913 | = 3798516 | 24 (1.260) | coding (797/1074 nt) | waaU | lipopolysaccharide core biosynthesis | |||||
TAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGA > NC_000913/3798260‑3798391 | tAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTa < 1:30115/68‑1 (MQ=255)tAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTa < 2:368002/68‑1 (MQ=255) ctctTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTg > 1:74698/1‑68 (MQ=255) tctTTTCTGAATTAGTTAAAGTTTCAGTATCGATAGCTTTTACCGTATATGTTGGGGATACTATTTGt < 1:677854/68‑1 (MQ=255) tctTTAGTGTATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTTTATGGTTGTGATACTAttttt < 1:677853/68‑3 (MQ=255) aCTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGTGATACTATTTGTATAGa < 2:16045/68‑1 (MQ=255) tttCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTa > 2:12386/1‑42 (MQ=255) tttCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTa < 1:12386/42‑1 (MQ=255) tCGATATCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgacca < 2:222668‑M1/68‑37 (MQ=255) cGATATCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaccaa < 1:14336‑M1/68‑38 (MQ=255) gATATCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaacaag < 1:195890‑M1/68‑39 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaccaagta > 2:358834‑M1/1‑28 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaccaa > 1:183526‑M1/1‑28 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACcatttgatgagtttatttataccgttgcgttgaccaa < 2:183526‑M1/65‑38 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACaatttgatgagattaattataacgttgcgttgaccaagta > 2:195890‑M1/1‑28 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACTATTTGTATAGa > 1:558712/1‑40 (MQ=255) tatCTTTTACCGTATATGTTGGGGATACTATTTGTATAGa < 2:558713/40‑1 (MQ=255) tatCTTATACCGTATATGTTGGGGATACcatttgatgagtttatttatacagttgagatgaacaagta > 2:14336‑M1/1‑28 (MQ=255) aCCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAggg < 2:407215/68‑1 (MQ=255) aCCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAggg < 2:111088/68‑1 (MQ=255) cGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGat > 1:494461/1‑68 (MQ=255) cGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGat > 1:280815/1‑68 (MQ=255) tataTGTTGTGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGatat < 1:18689/68‑1 (MQ=255) ggggATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATTTTCAGGAGt > 2:58219/1‑68 (MQ=255) ggggATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGt > 2:58218/1‑68 (MQ=255) ggATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTAc > 1:93934/1‑68 (MQ=255) ggATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTAc > 1:601186/1‑68 (MQ=255) gATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACg > 2:626234/1‑68 (MQ=255) aCTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGa < 2:280815/68‑1 (MQ=255) | TAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGA > NC_000913/3798260‑3798391 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |