New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 243009	12 (0.600)	4 (0.220)	3/118	1.8	24.5%	coding (295/2445 nt)	fadE	acyl coenzyme A dehydrogenase
	?	NC_000913	= 243192	14 (0.790)					coding (112/2445 nt)	fadE	acyl coenzyme A dehydrogenase

GGCACGAGGATAATGGCCAGAGGCACCAGTACCCACGCCGACCACAGACCAGCAACGCCGAGGGCGGCTGTCCAGGCGAGCAAAATCAGACTGCTGATAAATAAGCTCACGCGGTGATAGAACAAC  >  NC_000913/243134‑243259                                                           |                                                                    ggCACGAGGATAATGGCCAGAGGCACCAGTACCCACGCCGACCACAGCCCAGCAACGCCGAGggcggc                                                            >  1:420742/1‑68 (MQ=255)    aCGAGGATAATGGCCAGAGGCACCAGTACCCACGCCGACCACAGACCAGCAACGCCGAGGGCGGCTGt                                                         <  1:202483/68‑1 (MQ=255)             attgCCAGAGTCACCAGTACCCACGCCGACCACAGACCAGCAACGCCGAGGGCGTCTGTCCAGGCGAg                                                <  2:217834/65‑1 (MQ=255)             aTGGCCAGAGGCACCAGTACCCACGCCGACCACAGACCAGCAACGCCGAGGGCGGCTGTCCAGGCGAg                                                <  1:642081/68‑1 (MQ=255)               ggCCAGAGGCACCAGTACCCACGCCGACCACAGACCAGCAACGCCgagggcgacttgttccagggcaa                                              >  1:185785‑M2/1‑45 (MQ=255)               ggCCAGAGGCACCAGTACCCACGCCGACCACAGACCAGCAACGCCgagggcgacttgttccagggcaa                                              >  1:508638‑M2/1‑45 (MQ=255)                         aCCAGTACCCACGCCGACCACAGACCAGCAACGCCgagggcgacttgttccagggcaagccggactgg                                    >  1:713246‑M2/1‑35 (MQ=255)                               aCCCACGCCGACCACAGACCAGCAACGCCGAGGGCGGCTGTCCAGGCGAGCAAAATCAGACTGCTGat                              >  2:599830/1‑68 (MQ=255)                                 ccACGCCGACCACAGACCAGCAACGCCGAGGGCGGCTGTCCAGGCGAGCAAAATCAGACTGCTGataa                            >  1:434559/1‑68 (MQ=255)                                 ccACGCCGACCACAGACCAGCAACGCCGAGGGCGGCTGTCCAGGCGAGCAAAATCAGACTGCTGataa                            >  2:293737/1‑68 (MQ=255)                                  cACGCCGACCACAGACCAGCAACGCCgagggcgacttgttccagggcaagccggactggaaaaagctg                           >  1:464149‑M2/1‑26 (MQ=255)                                    cGCCGACCACAGACCAGCAACGCCGAGGGCGGCTGTCCAGGCGAGCAAAATCAGACTGCTGataaata                         >  2:403215/1‑68 (MQ=255)                                     gCCGACCACAGACCAGCAACGCCGAGGGCGGCTGTCCAGGCGAGCAAAATCAGACTGCTGataaataa                        >  1:689398/1‑68 (MQ=255)                                     gCCGACCACAGACCAGCAACGCCGAGGGCGGCTGTCCAGGCGAGCAAAATCAGACTGCTGataaataa                        >  2:167024/1‑68 (MQ=255)                                            acaGACCAGCAACGCCGAGGGCGGCTGTCCAGGCGAGCAAAATCAGACTGCTGATAAATAAGCTCAcg                 <  1:421910/68‑1 (MQ=255)                                                 ccAGCAACGCCGAGGGCGGCTGTCCAGGCGAGCAAAATCAGACTGCTGATAAATAAGCTCACGCGGTg            <  1:588360/68‑1 (MQ=255)                                                 ccAGCAACGCCGAGGGCGGCTGTCCAGGCGAGCAAAATCAGACTGCTGATAAATAAGCTCACGCGGTg            <  1:599829/68‑1 (MQ=255)                                                           cGAGGGCGGCTGTCCAGGCGAGCAAAATCAGACTGCTGATAAATAAGCTCACGCGGTGATAGaacagc  >  1:425053/1‑66 (MQ=255)                                                           |                                                                    GGCACGAGGATAATGGCCAGAGGCACCAGTACCCACGCCGACCACAGACCAGCAACGCCGAGGGCGGCTGTCCAGGCGAGCAAAATCAGACTGCTGATAAATAAGCTCACGCGGTGATAGAACAAC  >  NC_000913/243134‑243259

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.