New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 340887012 (0.600)4 (0.230) 4/116 1.4 32.6% coding (1264/1452 nt) panF pantothenate:sodium symporter
?NC_000913 = 3408895 6 (0.340)coding (1289/1452 nt) panF pantothenate:sodium symporter

CTGTGGCCGCTGGTGCTGGGTCTTTACTGGGAACGCGCCAACGCCAAAGGCGCGCTAAGTGCGATGATCGTTGGCGGCGTGCTGTATGCCGTACTCGCGACGCTGAATATTCAGTACCTGGGCTTCCACC  >  NC_000913/3408828‑3408957
                                                                   |                                                              
cTGTGGCCGCTGGTGCTGGGTCGTTAGTGGGAACGCGCCAACGCCAAAGGCGCGCTGAGTGCgatgat                                                                <  1:515138/68‑1 (MQ=255)
 tgtgGCCGCTGGTGCTGGGTCTTTACTGGGAACGCGCCAACGCCAAAGGCGCGCTAAGTGCGATGATc                                                               <  1:190554‑M2/68‑2 (MQ=255)
  gtgGCCGCTGGTGCTGGGTCTTTACTGGGAACGCGCCAACGCCAAAGGCGCGCTAAGTGCGATGATcg                                                              >  1:523005‑M2/1‑66 (MQ=255)
       cGCTGGTGCTGGGTCTTTACTGGGAACGCGCCAACGCCAAAGGCGCGCTAAGTGCGATGATcgttggc                                                         >  2:750641‑M2/1‑61 (MQ=255)
       cGCTGGTGCTGGGTCTTTACTGGGAACGCGCCAACGCCAAAGGCGCGCTAAGTGCGATGATcgttggc                                                         >  2:751473‑M2/1‑61 (MQ=255)
       cGCTGGTGCGGGGGCTTTACTGGGAACGCGCCAACGCCAAAGGCGCGCTAAGTGCGATGATcgttggc                                                         >  2:567311‑M2/1‑61 (MQ=255)
              gCTGGGTCTTTACTGGGAACGCGCCAACGCCAAAGGCGCGCTAAGTGCGATGATCGTTGGCGGCGTGc                                                  <  1:354986/68‑1 (MQ=255)
                         aCTGTGATCGCGCCAACGCCAAAGGCGCGCTAAGTGCGATGATCGTTGGCGGCGTGCTGTATGCCGTa                                       <  1:618736/68‑1 (MQ=255)
                         aCTGGGAACGCGCCAACGCCAAAGGCGCGCTAAGTGCGATGATCGTTGGCGGCGTGCTGTATGCCGTa                                       <  1:83351/68‑1 (MQ=255)
                                 cgcgCCAACGCCAAAGGCGCGCTAAGTGCGATGATCGTTGGCGGCGTGCTGTATGCCGTACTCGCGAc                               <  2:674391/68‑1 (MQ=255)
                                     ccaacgccaaAGGCGCGCTAAGTGCGATGATCGTTGGCGGCGTGCTGTATGCCGTACTCGCGACGCTg                           >  1:312734/1‑68 (MQ=255)
                                                ggCGCGCTAAGTGCGATGATcgttggcgcgttcccagta                                             >  1:68654‑M2/1‑20 (MQ=255)
                                                ggCGCGCTAAGTGCGATGATcgttggcgcgttcccagta                                             <  2:68654‑M2/39‑20 (MQ=255)
                                                 gcgcgcTAAGTGCGATGATcgttggcgcgttcccagtaaagacccagcaccagcggccacaggaaaac               <  2:330429‑M2/68‑50 (MQ=255)
                                                        aaGTGCGATGATCGTTGGCGGCGTGCTGTATGCCGTACTCGCGACGCTGAATATTCAGTACCTGGGCt        >  1:514060/1‑68 (MQ=255)
                                                              gatgatcgttggcgcgttcccagtaaagacccagcaccagcggccacaggaaaacggcttccagccca  >  1:330429‑M2/1‑6 (MQ=255)
                                                                   |                                                              
CTGTGGCCGCTGGTGCTGGGTCTTTACTGGGAACGCGCCAACGCCAAAGGCGCGCTAAGTGCGATGATCGTTGGCGGCGTGCTGTATGCCGTACTCGCGACGCTGAATATTCAGTACCTGGGCTTCCACC  >  NC_000913/3408828‑3408957

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.