| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3831044 | 18 (0.700) | 8 (0.370) | 4/110 | 1.8 | 33.4% | coding (588/1710 nt) | yicH | putative inner membrane‑anchored periplasmic AsmA family protein |
| ? | NC_000913 | = 3831092 | 17 (0.790) | coding (636/1710 nt) | yicH | putative inner membrane‑anchored periplasmic AsmA family protein | |||||
TGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCA > NC_000913/3830984‑3831111 | tgatgTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAAcc < 1:451313/68‑1 (MQ=255)tgatgTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAAcc < 2:54692/68‑1 (MQ=255) tgTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGcgcgtttccg < 1:729850‑M1/68‑11 (MQ=255) tgTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGcgcgtttccg < 1:144924‑M1/68‑11 (MQ=255) tgTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGcgcgttaccg < 1:897300‑M1/68‑11 (MQ=255) tcatGCAACCAATGTACAGATTGAAGGCAGAATTGATAACGATCGCGTTACGCAGACTAACCTGGGTg > 1:811628/4‑68 (MQ=255) tCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGCTCGCGTTACGCTGACTAACCTGGGTg > 2:147742/1‑68 (MQ=255) tCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTg < 1:713028/68‑1 (MQ=255) tCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCAGGGTg > 1:216161/1‑68 (MQ=255) tGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCg > 1:602373/1‑68 (MQ=255) gCCACCAATGTACTGAGTGAAGGCAGTATTGATAACGATCGCGGTACGCTGACTAACCTGGTTGCCGa < 2:964806/68‑1 (MQ=255) ccaATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATc > 2:537303/1‑68 (MQ=255) aTGAACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGcgcgtttccggttaatgccccgcg < 2:612991‑M1/68‑25 (MQ=255) aCTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCcgcg > 2:452517/1‑68 (MQ=255) aCTGATAGAAGGCAGTATTGATAACGCTCGCGTTACGCTGACTAACCTTATTGCCGACATCGCAcgcg > 1:256677/1‑68 (MQ=255) tGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCggg > 2:489239/1‑68 (MQ=255) gATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGa > 1:761158/1‑68 (MQ=255) ttGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAGCCTGGGTGCCGACATCGCCCGCGGGACa > 2:145688/1‑68 (MQ=255) gTATTGATAACGATCGCGTTACGCTGcgcgtttccggttaatgtcccgcgggcgatgtcggcacccag < 2:746331‑M1/68‑43 (MQ=255) gTATTGATAACGATCGCGTTACGCTGcgcgtttccggttaatgtcccgcgggcgatgtcggcacccag < 2:118486‑M1/68‑43 (MQ=255) gATAACTATCGCGTTTCGCTGACTAACCTGGTTGCCGACATCGCCCGCGGGACATTAACCGGAAAcgc < 2:408077/68‑1 (MQ=255) tAACGCTCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGc < 1:849518‑M2/68‑2 (MQ=255) tAACGATCGCGTTACGCTGcgcgtttccggttaatgtcccgcgggcgatgtcggcacccag < 2:676201‑M1/61‑43 (MQ=255) tAACGATCGCGTTACGCTGcgcgtttccggttaatgtcccgcgggcgatgtcggcacccag > 1:676201‑M1/1‑19 (MQ=255) tAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTaa > 1:419200/1‑56 (MQ=255) tAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTaa < 2:419200/56‑1 (MQ=255) tAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGc < 1:262973‑M2/68‑2 (MQ=255) tAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGc < 1:167528‑M2/68‑2 (MQ=255) aCGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGcag < 2:203944‑M2/68‑4 (MQ=255) aCGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGcag < 1:122057‑M2/68‑4 (MQ=255) cGATCGCGTTACGCTGACTAACCTGGGCGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGcagc > 2:638618‑M2/1‑64 (MQ=255) ccgcgtTACGCTGACTAACCTGTGCGCCGACATCGCCCGCGGGACATTAACCGGAAACCAGcggcgta > 2:655782‑M2/2‑61 (MQ=255) tACGCCGctggtttccggttaatgtcccgcgggcgatgtcggcgcacaggttagtcagcgtaacgcgg > 2:655782‑M1/1‑7 (MQ=255) gCTGcgcgtttccggttaatgtcccgcgggcgatgtcggcgcccaggttagtcagcgtaacgcgatcg > 2:638618‑M1/1‑4 (MQ=255) cTGcgcgtttccggttaatgtcccgcgggcgatgtcggcacccaggttagtcagcgtaacgcgatcgt < 1:122057‑M1/68‑66 (MQ=255) cTGcgcgtttccggttaatgtcccgcgggcgatgtcggcacccaggttagtcagcgtaacgcgatcgt < 2:203944‑M1/68‑66 (MQ=255) cTGACTAAACTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCGGACgg > 2:283106/1‑68 (MQ=255) gcgcgtttccggttaatgtcccgcgggcgatgtcggcacccaggttagtcagcgtaacgcgatcgtta < 1:262973‑M1/68‑68 (MQ=255) gcgcgtttccggttaatgtcccgcgggcgatgtcggcacccaggttagtcagcgtaacgcgatcgtta < 1:167528‑M1/68‑68 (MQ=255) gcgcgtttccggttaatgtcccgcgggcgatgtcggcacccaggttagtcagcgtaacgcgagcgtta < 1:849518‑M1/68‑68 (MQ=255) | TGATGTTCCTGCCACCAATGTACTGATTGAAGGCAGTATTGATAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCA > NC_000913/3830984‑3831111 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |