New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3831044	18 (0.700)	8 (0.370)	4/110	1.8	33.4%	coding (588/1710 nt)	yicH	putative inner membrane‑anchored periplasmic AsmA family protein
	?	NC_000913	= 3831092	17 (0.790)					coding (636/1710 nt)	yicH	putative inner membrane‑anchored periplasmic AsmA family protein

TAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACA  >  NC_000913/3831026‑3831154                                                                   |                                                               tAACGCTCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGc                                                               <  1:849518‑M2/68‑2 (MQ=255) tAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGc                                                               <  1:167528‑M2/68‑2 (MQ=255) tAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGc                                                               <  1:262973‑M2/68‑2 (MQ=255)   aCGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGcag                                                             <  1:122057‑M2/68‑4 (MQ=255)   aCGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGcag                                                             <  2:203944‑M2/68‑4 (MQ=255)    cGATCGCGTTACGCTGACTAACCTGGGCGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGcagc                                                            >  2:638618‑M2/1‑64 (MQ=255)       ccgcgtTACGCTGACTAACCTGTGCGCCGACATCGCCCGCGGGACATTAACCGGAAACCAGcggcgta                                                         >  2:655782‑M2/2‑61 (MQ=255)                 cTGACTAAACTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCGGACgg                                               >  2:283106/1‑68 (MQ=255)                     cTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGc                                           >  2:776223/1‑68 (MQ=255)                          cTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGcagcgtaacgcgatcgttatcaatac                                      <  2:746331‑M2/68‑27 (MQ=255)                          cTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGcagcgtaacgcgatcgttatcaatac                                      <  2:118486‑M2/68‑27 (MQ=255)                          cTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGcagcgtaacgcgatcgtta                                             <  2:676201‑M2/61‑20 (MQ=255)                          cTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGcagcgtaacgcgatcgtta                                             >  1:676201‑M2/1‑42 (MQ=255)                          cTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTACCGCCGACGGCAGCTGGCa                                      >  1:428422/1‑68 (MQ=255)                          cTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGCCGGCAGCTGGCa                                      >  2:263036/1‑68 (MQ=255)                              gTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTg                                  <  2:54144/68‑1 (MQ=255)                                          cccGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGGCGGCAGCTGGCAAGTGGAAAGCCTgcgc                      >  2:391049/1‑68 (MQ=255)                                          cccGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGCCGGCAGCTGGCAAGTGGAAAACCTgcgc                      >  1:590556/1‑68 (MQ=255)                                            cgcgGGGCATTAACCGGAAACGCGcagcgtaacgcgatcgttatcaatactgccttcaatcagttcat                    <  2:612991‑M2/68‑45 (MQ=255)                                              cgGGACATTAACCGGATACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAATCCTGCGCATgg                  <  1:147692/68‑1 (MQ=255)                                                 gACATTAACCGGAAACGCGCAGCGTAACGCCGACGTCAGCTGGCAAGTGGAAAACCTGCGCATGGCgg               <  2:857664/68‑1 (MQ=255)                                                 gACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCgg               <  1:470568/68‑1 (MQ=255)                                                      tAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGAtata          <  1:878466/68‑1 (MQ=255)                                                      tAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGAtata          <  1:145688/68‑1 (MQ=255)                                                       aaCCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATAc         >  1:50072/1‑68 (MQ=255)                                                        aCCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACg        <  1:147742/68‑1 (MQ=255)                                                         ccGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGt       >  2:325287/1‑68 (MQ=255)                                                          cGGTAACGCGcagcgtaacgcgatcgttatcaatactgccttcaatcagtacattggtggcaggaaca      <  1:897300‑M2/68‑59 (MQ=255)                                                          cGGAAACGCGcagcgtaacgcgatcgttatcaatactgccttcaatcagtacattggtggcaggaaca      <  1:729850‑M2/68‑59 (MQ=255)                                                          cGGAAACGCGcagcgtaacgcgatcgttatcaatactgccttcaatcagtacattggtggcaggaaca      <  1:144924‑M2/68‑59 (MQ=255)                                                          cGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTc      >  2:281106/1‑68 (MQ=255)                                                              aaCGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAGACCTGCGCATGGCGGATATACGTCTACa  >  2:700044/1‑68 (MQ=255)                                                                   |                                                               TAACGATCGCGTTACGCTGACTAACCTGGGTGCCGACATCGCCCGCGGGACATTAACCGGAAACGCGCAGCGTAACGCCGACGGCAGCTGGCAAGTGGAAAACCTGCGCATGGCGGATATACGTCTACA  >  NC_000913/3831026‑3831154

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.