mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007779_cfb | 1,097,580 | 0 | C | T | 24.1% | 35.0 / 11.4 | 29 | intergenic (+329/+226) | ycdU/serX | inner membrane protein/tRNA‑Ser |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779_cfb | 4310363 = | NA (NA) | 83 (0.530) | 45/440 | 5.8 | 97.7% | intergenic (‑287/‑68) | yjcS/insH_15 | alkyl sulfatase/IS5 element protein |
| ? | NC_007779_cfb | = 4540919 | 2 (0.010) | intergenic (+208/+375) | yjhR/nanS | frameshift suppressor/hypothetical protein | |||||
| * | ? | NC_007779_cfb | 4547362 = | 89 (0.570) | 11 (0.070) | 10/422 | 14.9 | 10.1% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/offregulator of fimA/major type 1 subunit fimbrin |
| ? | NC_007779_cfb | 4547676 = | 110 (0.740) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/offregulator of fimA/major type 1 subunit fimbrin | |||||
| * | ? | NC_007779_cfb | = 4547370 | 81 (0.520) | 8 (0.050) | 8/422 | 16.0 | 7.9% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/offregulator of fimA/major type 1 subunit fimbrin |
| ? | NC_007779_cfb | = 4547666 | 108 (0.720) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/offregulator of fimA/major type 1 subunit fimbrin | |||||
| * | ? | NC_007779_cfb | = 2069490 | 218 (1.400) | 49 (0.310) | 4/440 | 18.9 | 30.8% | intergenic (‑32/+1599) | insH/insD_4 | IS5 transposase and trans‑activator/IS2 insertion element transposase InsAB' |
| ? | NC_007779_cfb | = 4540919 | 2 (0.010) | intergenic (+208/+375) | yjhR/nanS | frameshift suppressor/hypothetical protein | |||||
| * | ? | NC_007779_cfb | 723522 = | 160 (1.030) | 3 (0.020) | 3/420 | 19.3 | 1.9% | coding (1315/2685 nt) | kdpD | fused sensory histidine kinase in two‑componentregulatory system with KdpE |
| ? | NC_007779_cfb | = 723518 | 154 (1.030) | coding (1319/2685 nt) | kdpD | fused sensory histidine kinase in two‑componentregulatory system with KdpE | |||||