mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007779_cfb | 1,097,580 | 0 | C | T | 46.2% | ‑5.6 / 26.1 | 26 | intergenic (+329/+226) | ycdU/serX | inner membrane protein/tRNA‑Ser |
| * | NC_007779_cfb | 1,097,540 | 0 | C | A | 33.3% | 28.1 / 21.6 | 30 | intergenic (+289/+266) | ycdU/serX | inner membrane protein/tRNA‑Ser |
| * | NC_007779_cfb | 379,237 | 0 | G | . | 20.4% | 105.5 / 27.8 | 49 | intergenic (‑132/+56) | frmR/yaiO | regulator protein that represses frmRAB operon/hypothetical protein |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779_cfb | 4310363 = | NA (NA) | 61 (0.500) | 36/438 | 5.1 | 98.4% | intergenic (‑287/‑68) | yjcS/insH_15 | alkyl sulfatase/IS5 element protein |
| ? | NC_007779_cfb | = 4540919 | 1 (0.010) | intergenic (+208/+375) | yjhR/nanS | frameshift suppressor/hypothetical protein | |||||
| * | ? | NC_007779_cfb | = 4547370 | 74 (0.600) | 11 (0.090) | 10/420 | 11.8 | 11.0% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/offregulator of fimA/major type 1 subunit fimbrin |
| ? | NC_007779_cfb | = 4547666 | 107 (0.910) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/offregulator of fimA/major type 1 subunit fimbrin | |||||
| * | ? | NC_007779_cfb | 1854689 = | 131 (1.070) | 4 (0.030) | 4/422 | 15.2 | 3.1% | coding (1005/1359 nt) | ydjE | transporter |
| ? | NC_007779_cfb | = 1854685 | 126 (1.060) | coding (1009/1359 nt) | ydjE | transporter | |||||
| * | ? | NC_007779_cfb | = 2069490 | 119 (0.970) | 40 (0.330) | 4/438 | 15.5 | 40.0% | intergenic (‑32/+1599) | insH/insD_4 | IS5 transposase and trans‑activator/IS2 insertion element transposase InsAB' |
| ? | NC_007779_cfb | = 4540919 | 1 (0.010) | intergenic (+208/+375) | yjhR/nanS | frameshift suppressor/hypothetical protein | |||||
| * | ? | NC_007779_cfb | 2565490 = | 85 (0.690) | 4 (0.030) | 3/418 | 15.8 | 4.7% | coding (51/1404 nt) | eutA | reactivating factor for ethanolamine ammonialyase |
| ? | NC_007779_cfb | = 2565486 | 82 (0.700) | coding (55/1404 nt) | eutA | reactivating factor for ethanolamine ammonialyase | |||||