mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007779_cfb | 1,097,580 | 0 | C | T | 37.5% | 10.5 / 25.3 | 32 | intergenic (+329/+226) | ycdU/serX | inner membrane protein/tRNA‑Ser |
| * | NC_007779_cfb | 1,097,540 | 0 | C | A | 30.3% | 32.3 / 19.1 | 33 | intergenic (+289/+266) | ycdU/serX | inner membrane protein/tRNA‑Ser |
| * | NC_007779_cfb | 3,974,717 | 0 | A | G | 22.0% | 92.6 / 10.7 | 50 | D38G (GAT→GGT) | gadX | DNA‑binding transcriptional dual regulator |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779_cfb | 4310363 = | NA (NA) | 59 (0.420) | 50/438 | 4.2 | 93.7% | intergenic (‑287/‑68) | yjcS/insH_15 | alkyl sulfatase/IS5 element protein |
| ? | NC_007779_cfb | = 4540919 | 4 (0.030) | intergenic (+208/+375) | yjhR/nanS | frameshift suppressor/hypothetical protein | |||||
| * | ? | NC_007779_cfb | 4547362 = | 68 (0.490) | 6 (0.040) | 6/420 | 15.9 | 6.8% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/offregulator of fimA/major type 1 subunit fimbrin |
| ? | NC_007779_cfb | 4547676 = | 99 (0.740) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/offregulator of fimA/major type 1 subunit fimbrin | |||||
| * | ? | NC_007779_cfb | 3456010 = | 149 (1.070) | 5 (0.040) | 5/418 | 16.5 | 3.4% | coding (112/366 nt) | rplL | 50S ribosomal protein L7/L12 |
| ? | NC_007779_cfb | = 3456006 | 144 (1.080) | coding (116/366 nt) | rplL | 50S ribosomal protein L7/L12 | |||||
| * | ? | NC_007779_cfb | 4410279 = | 132 (0.950) | 5 (0.040) | 5/420 | 16.6 | 3.8% | coding (913/1299 nt) | purA | adenylosuccinate synthetase |
| ? | NC_007779_cfb | = 4410275 | 128 (0.960) | coding (909/1299 nt) | purA | adenylosuccinate synthetase | |||||
| * | ? | NC_007779_cfb | = 2069490 | 141 (1.010) | 52 (0.370) | 5/438 | 17.0 | 41.8% | intergenic (‑32/+1599) | insH/insD_4 | IS5 transposase and trans‑activator/IS2 insertion element transposase InsAB' |
| ? | NC_007779_cfb | = 4540919 | 4 (0.030) | intergenic (+208/+375) | yjhR/nanS | frameshift suppressor/hypothetical protein | |||||
| * | ? | NC_007779_cfb | = 4547370 | 68 (0.490) | 4 (0.030) | 4/420 | 17.3 | 4.6% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/offregulator of fimA/major type 1 subunit fimbrin |
| ? | NC_007779_cfb | = 4547666 | 99 (0.740) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/offregulator of fimA/major type 1 subunit fimbrin | |||||
| * | ? | NC_007779_cfb | = 1396608 | 2 (0.010) | 4 (0.030) | 4/438 | 17.7 | 66.7% | coding (1029/1032 nt) | ynaI | inner membrane protein |
| ? | NC_007779_cfb | 1397758 = | NA (NA) | intergenic (‑122/‑32) | ynaI/insH_8 | inner membrane protein/IS5 transposase and trans‑activator | |||||
| * | ? | NC_007779_cfb | 3175003 = | 158 (1.130) | 3 (0.020) | 3/420 | 18.1 | 1.9% | coding (487/828 nt) | cpdA | cyclic 3',5'‑adenosine monophosphatephosphodiesterase |
| ? | NC_007779_cfb | = 3174999 | 151 (1.130) | coding (491/828 nt) | cpdA | cyclic 3',5'‑adenosine monophosphatephosphodiesterase | |||||
| * | ? | NC_007779_cfb | 118134 = | 173 (1.240) | 3 (0.020) | 3/424 | 18.2 | 1.7% | coding (512/894 nt) | nadC | quinolinate phosphoribosyltransferase |
| ? | NC_007779_cfb | = 118130 | 171 (1.270) | coding (516/894 nt) | nadC | quinolinate phosphoribosyltransferase | |||||