mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 86 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007779 | 1,553,916 | 0 | G | T | 62.5% | ‑0.6 / 32.0 | 24 | intergenic (+211/+196) | fdnI/Y75_RS07795 | formate dehydrogenase‑N subunit gamma/HigA family addiction module antidote protein |
| * | NC_007779 | 438,443 | 1 | . | T | 54.2% | 43.7 / 42.4 | 24 | coding (959/1863 nt) | dxs | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| * | NC_007779 | 438,443 | 2 | . | C | 54.2% | 44.3 / 43.9 | 24 | coding (959/1863 nt) | dxs | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| * | NC_007779 | 438,443 | 3 | . | G | 54.2% | 42.9 / 42.9 | 24 | coding (959/1863 nt) | dxs | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| * | NC_007779 | 438,443 | 4 | . | G | 54.2% | 44.1 / 42.9 | 24 | coding (959/1863 nt) | dxs | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| * | NC_007779 | 438,443 | 5 | . | C | 54.2% | 44.3 / 43.9 | 24 | coding (959/1863 nt) | dxs | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| * | NC_007779 | 438,443 | 6 | . | A | 54.2% | 49.4 / 41.7 | 24 | coding (959/1863 nt) | dxs | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| * | NC_007779 | 438,443 | 7 | . | A | 54.2% | 45.5 / 41.7 | 24 | coding (959/1863 nt) | dxs | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| * | NC_007779 | 438,443 | 8 | . | A | 54.2% | 44.8 / 41.7 | 24 | coding (959/1863 nt) | dxs | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| * | NC_007779 | 438,443 | 9 | . | C | 54.2% | 44.3 / 43.9 | 24 | coding (959/1863 nt) | dxs | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| * | NC_007779 | 438,443 | 10 | . | C | 54.2% | 44.3 / 43.9 | 24 | coding (959/1863 nt) | dxs | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| * | NC_007779 | 438,443 | 11 | . | G | 54.2% | 44.1 / 42.9 | 24 | coding (959/1863 nt) | dxs | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| * | NC_007779 | 438,443 | 12 | . | C | 54.2% | 41.7 / 43.9 | 24 | coding (959/1863 nt) | dxs | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| * | NC_007779 | 438,443 | 14 | . | G | 54.2% | 43.9 / 42.9 | 24 | coding (959/1863 nt) | dxs | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| * | NC_007779 | 438,443 | 15 | . | C | 54.2% | 44.6 / 43.9 | 24 | coding (959/1863 nt) | dxs | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| * | NC_007779 | 438,443 | 16 | . | T | 54.2% | 47.5 / 42.4 | 24 | coding (959/1863 nt) | dxs | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| * | NC_007779 | 438,443 | 17 | . | A | 54.2% | 49.2 / 41.7 | 24 | coding (959/1863 nt) | dxs | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| * | NC_007779 | 438,443 | 18 | . | C | 54.2% | 46.0 / 43.9 | 24 | coding (959/1863 nt) | dxs | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| * | NC_007779 | 438,443 | 19 | . | T | 54.2% | 42.8 / 42.4 | 24 | coding (959/1863 nt) | dxs | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| * | NC_007779 | 438,443 | 20 | . | T | 54.2% | 43.1 / 42.4 | 24 | coding (959/1863 nt) | dxs | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779 | = 438443 | 0 (0.000) | 39 (0.370) +21 bp |
40/394 | 3.6 | 100% | coding (959/1863 nt) | dxs | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| ? | NC_007779 | 438444 = | 0 (0.000) | coding (958/1863 nt) | dxs | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase | |||||
| * | ? | NC_007779 | 438444 = | 8 (0.070) | 50 (0.440) | 48/478 | 3.9 | 84.2% | coding (958/1863 nt) | dxs | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase |
| ? | NC_007779 | = 438464 | 11 (0.100) | coding (938/1863 nt) | dxs | 1‑deoxy‑D‑xylulose‑5‑phosphate synthase | |||||
| * | ? | NC_007779 | 4310363 = | NA (NA) | 48 (0.410) | 40/496 | 5.7 | 94.1% | intergenic (‑287/‑32) | yjcS/Y75_RS21310 | alkyl sulfatase YjcS/IS5‑like element IS5 family transposase |
| ? | NC_007779 | = 4540919 | 3 (0.030) | intergenic (+208/+375) | Y75_RS22495/Y75_RS22500 | hypothetical protein/9‑O‑acetyl‑N‑acetylneuraminic acid deacetylase | |||||
| * | ? | NC_007779 | = 4547370 | 126 (1.080) | 25 (0.220) | 24/478 | 9.3 | 17.0% | intergenic (+57/‑425) | fimE/fimA | type 1 fimbria regulatory protein FimE/metal ABC transporter substrate‑binding lipoprotein/fibrin‑binding adhesin FimA |
| ? | NC_007779 | = 4547666 | 122 (1.090) | intergenic (+353/‑129) | fimE/fimA | type 1 fimbria regulatory protein FimE/metal ABC transporter substrate‑binding lipoprotein/fibrin‑binding adhesin FimA | |||||
| * | ? | NC_007779 | 4547362 = | 128 (1.100) | 17 (0.150) | 17/478 | 11.8 | 12.2% | intergenic (+49/‑433) | fimE/fimA | type 1 fimbria regulatory protein FimE/metal ABC transporter substrate‑binding lipoprotein/fibrin‑binding adhesin FimA |
| ? | NC_007779 | 4547676 = | 122 (1.090) | intergenic (+363/‑119) | fimE/fimA | type 1 fimbria regulatory protein FimE/metal ABC transporter substrate‑binding lipoprotein/fibrin‑binding adhesin FimA | |||||
| * | ? | NC_007779 | = 2069490 | 129 (1.110) | 45 (0.390) | 15/496 | 13.0 | 40.5% | intergenic (‑32/+1) | Y75_RS10470/Y75_RS24935 | IS5‑like element IS5 family transposase/hypothetical protein |
| ? | NC_007779 | = 4540919 | 3 (0.030) | intergenic (+208/+375) | Y75_RS22495/Y75_RS22500 | hypothetical protein/9‑O‑acetyl‑N‑acetylneuraminic acid deacetylase | |||||
| * | ? | NC_007779 | 1413613 = | 144 (1.230) | 11 (0.110) | 11/444 | 13.7 | 8.9% | coding (50/936 nt) | ttcA | tRNA 2‑thiocytidine(32) synthetase TtcA |
| ? | NC_007779 | = 1436672 | 96 (0.920) | intergenic (+39/+227) | Y75_RS24865/uspF | hypothetical protein/universal stress protein UspF | |||||