mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 64 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_007779 | 1,097,580 | 0 | C | T | 36.4% | 39.9 / 58.1 | 55 | intergenic (+329/+45) | Y75_RS05375/Y75_RS05385 | hypothetical protein/RtT sRNA |
| * | NC_007779 | 2,004,055 | 0 | A | C | 34.5% | 159.9 / 23.6 | 87 | intergenic (‑129/+192) | Y75_RS10125/fliC | RNA polymerase sigma factor FliA/H48 family flagellin FliC |
| * | NC_007779 | 2,331,120 | 0 | T | G | 34.0% | 89.8 / 16.2 | 50 | G114G (GGT→GGG) | Y75_RS11690 | acetyl‑CoA acetyltransferase |
| * | NC_007779 | 1,097,540 | 0 | C | A | 32.1% | 99.3 / 36.5 | 54 | intergenic (+289/+85) | Y75_RS05375/Y75_RS05385 | hypothetical protein/RtT sRNA |
| * | NC_007779 | 3,404,070 | 0 | T | G | 31.8% | 119.0 / 15.2 | 63 | G244G (GGT→GGG) | Y75_RS16905 | oxidoreductase |
| * | NC_007779 | 4,609,024 | 0 | C | T | 31.2% | 134.1 / 37.8 | 80 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional activator BglJ |
| * | NC_007779 | 3,974,713 | 0 | G | T | 30.9% | 230.6 / 29.7 | 98 | A37S (GCG→TCG) | gadX | acid resistance transcriptional activator GadX |
| * | NC_007779 | 2,004,048 | 0 | G | A | 30.2% | 156.4 / 36.6 | 86 | intergenic (‑122/+199) | Y75_RS10125/fliC | RNA polymerase sigma factor FliA/H48 family flagellin FliC |
| * | NC_007779 | 2,902,348 | 0 | C | A | 30.1% | 169.5 / 39.5 | 73 | intergenic (+318/+1055) | Y75_RS14470/queE | kinase/7‑carboxy‑7‑deazaguanine synthase QueE |
| * | NC_007779 | 2,902,371 | 0 | G | A | 29.6% | 131.9 / 45.7 | 71 | intergenic (+341/+1032) | Y75_RS14470/queE | kinase/7‑carboxy‑7‑deazaguanine synthase QueE |
| * | NC_007779 | 3,205,091 | 0 | C | T | 28.7% | 138.5 / 35.9 | 80 | intergenic (‑179/‑28) | ttdR/ttdA | DNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_007779 | 29,496 | 0 | T | A | 28.1% | 212.3 / 34.9 | 89 | intergenic (+301/‑155) | dapB/Y75_RS00165 | 4‑hydroxy‑tetrahydrodipicolinate reductase/glutamine‑hydrolyzing carbamoyl‑phosphate synthase small subunit |
| * | NC_007779 | 3,205,102 | 0 | C | A | 26.6% | 136.4 / 17.7 | 79 | intergenic (‑190/‑17) | ttdR/ttdA | DNA‑binding transcriptional activator TtdR/L(+)‑tartrate dehydratase subunit alpha |
| * | NC_007779 | 3,974,717 | 0 | A | G | 26.3% | 206.9 / 33.4 | 99 | D38G (GAT→GGT) | gadX | acid resistance transcriptional activator GadX |
| * | NC_007779 | 753,547 | 0 | T | A | 26.0% | 228.3 / 37.7 | 100 | intergenic (‑330/+60) | Y75_RS03720/gltA | type 1 fimbrial protein/citrate (Si)‑synthase |
| * | NC_007779 | 3,004,668 | 0 | C | T | 25.9% | 189.9 / 20.9 | 81 | intergenic (‑226/‑253) | Y75_RS14955/ygeW | sigma‑54‑dependent transcriptional regulator/knotted carbamoyltransferase YgeW |
| * | NC_007779 | 1,622,832 | 0 | A | C | 24.8% | 256.9 / 19.4 | 113 | V7G (GTG→GGG) | eamA | O‑acetylserine/cysteine exporter |
| * | NC_007779 | 3,974,763 | 0 | C | T | 24.7% | 206.1 / 18.3 | 89 | F53F (TTC→TTT) | gadX | acid resistance transcriptional activator GadX |
| * | NC_007779 | 4,084,211 | 0 | T | G | 24.7% | 185.4 / 13.8 | 77 | S215R (AGT→AGG) | rtcA | RNA 3'‑terminal phosphate cyclase |
| * | NC_007779 | 3,974,791 | 0 | C | T | 24.4% | 205.3 / 19.7 | 86 | L63F (CTC→TTC) | gadX | acid resistance transcriptional activator GadX |