| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_007779 | 4400783 = | 121 (1.080) | 3 (0.030) | 3/476 | 19.3 | 2.5% | coding (39/1338 nt) | amiB | N‑acetylmuramoyl‑L‑alanine amidase AmiB |
| ? | NC_007779 | = 4400779 | 118 (1.100) | coding (35/1338 nt) | amiB | N‑acetylmuramoyl‑L‑alanine amidase AmiB | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAACGGCAGTCCCTGAATCACGCCCGTTTGTTTGATATCGAGCGCCACGGTGCGTTTGCTTTGATGGCTAAACGCATAATCAGGATCGCCAATAAAACTCAACGTTATCCGCGCCTGTTGATTACCGTTAGAAACCTGAATATCAGAGAGCGTCGCGGCACCCACCGGCGTGCACAGCAGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_007779/4401041‑4400783‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcagcagcGTCGCTACCAACCAATTTCTGATGCGATACATCATCCCGCCACCTTTCAAAGGTTAACCGGCTAAACGCGCCAGCAACAATTCACCCGCAGAGGAAACCGCACTCACGCGCGCCTCACGGCCTTGTGCCTGATAATCAATGTGTATTTCGACATCCGGGTCAGGAAGAACACCTGTACCTTGTTGTGGCCACTCCACCAGGCAGATGGCATCGTTGGCAAAATAATCGCGGATCCCCATAAACT < NC_007779/4400779‑4400536 CACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAACGGCAGTCCCTGAATCACGCCCGTTTGTTTGATATCGAGCGCCACGGTGCGTTTGCTTTGATGGCTAAACGCATAATCAGGATCGCCAATAAAACTCAACGTTATCCGCGCCTGTTGATTACCGTTAGAAACCTGAATATCAGAGAGCGTCGCGGCACCCACCGGCGTGCAC < 2:559269/250‑1 AGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAACGGCAGTCCCTGAATCACGCCCGTTTGTTTGATATCGAGCGCCACGGTGCGTTTGCTTTGATGGCTAAACGCATAATCAGGATCGCCAATAAAACTCAACGTTATCCGCGCCTGTTGATTACCGTTAGAAACCTGAATATCAGAGAGCGTCGCGGCACCCACCGGCGTGCACAGCA < 2:695468/250‑1 GCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAACGGCAGTCCCTGAATCACGCCCGTTTGTTTGATATCGAGCGCCACGGTGCGTTTGCTTTGATGGCTAAACGCATAATCAGGATCGCCAATAAAACTCAACGTTATCCGCGCCTGTTGATTACCGTTAGAAACCTGAATATCAGAGAGCGTCGCGGCACCCACCGGCGTGCACAGCAG < 1:663997/250‑1 CCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAACGGCAGTCCCTGAATCACGCCCGTTTGTTTGATATCGAGCGCCACGGTGCGTTTGCTTTGATGGCTAAACGCATAATCAGGATCGCCAATAAAACTCAACGTTATCCGCGCCTGTTGATTACCGTTAGAAACCTGAATATCAGAGAGCGTCGCGGCACCCACCGGCGTGCACAGCAGC > 2:252834/1‑250 TTTGATATCGAGCGCCACGGTGCGTTTGCTTTGATGGCTAAACGCATAATCAGGATCGCCAATAAAACTCAACGTTATCCGCGCCTGTTGATTACCGTTAGAAACCTGAATATCAGAGAGCGTCGCGGCACCCACCGGCGTGCACAGCAGCAGCGTCGCTACCAACCAATTTCTGATGCGATACATCATCCCGCCACCTTTCAAAGGTTAACCGGCTAAACGCGCCAGCAACAATTCACCCGCAGAGGAA > 2:987812/1‑250 tgaCTAAACGCATAATCAGGATCGCCAATAAAACTCAACGTTAACCGCGCCTGTTGATTACCGTTAGAAACCTGAATATCAGAGAGCGTCGCGGCACCCACCGGCGTGCACAGCAGCAGCGTCGCTACCAACCAATTTCTGATGCGATACATCATCCCGCCACCTTTCAAAGGTTAACCGGCTAAACGCGCCAGCAACAATTCACCCGCAGAGGAAACCGCACTCACGCGCGCCTCACGGCCTTGTGCCT < 2:391322/247‑1 TCAGGATCGCCAATAAAACTCAACGTTATCCGCGCCTGTTGATTACCGTTAGAAACCTGAATATCAGAGAGCGTCGCGGCACCCACCGGCGTGCACAGCAGCAGCGTCGCTACCAACCAATTTCTGATGCGATACATCATCCCGCCACCTTTCAAAGGTTAACCGGCTAAACGCGCCAGCAACAATTCACCCGCAGAGGAAACCGCACTCACGCGCGCCTCACGGCCTTGTGCCTGATAATCAATGTGTA < 1:987812/250‑1 AGCAGCCGCGTCGCTACCAACCAATTTCTGATGCGATACATCATCCCGCCACCTTCCAAAGGATAACCGGCTAAACGCGCCAGCAACAAGTCTCCCGCAGAGGAAACCGCACTCACGCGCGCCTCGCGGCCTTGTGCCTGATAATCAATGTGTATTTCGACATCCGGGTCAGGAAGCACGCCTGTACCTTGTTGTGGCCACTCCACCAGGCAGATGGCATCGTTGGCAAAATAATCGCGGATCCCCATAA < 2:253925/250‑1 AGCAGCGTCGCTACCAACCAATTTCTGATGCGATACATCATCCCGCCACCTTTCAAAGGTTAACCGGCTAAACGCGCCAGCAACAATTCACCCGCAGAGGAAACCGCACTCACGCGCGCCTCACGGCCTTGTGCCTGATAATCAATGTGTATTTCGACATCCGGGTCAGGAAGAACACCTGTACCTTGTTGTGGCCACTCCACCAGGCAGATGGCATCGTTGGCAAAATAATCGCGGATCCCCATAAACT > 2:339145/1‑250 AGCAGCGTCGCTACCAACCAATTTCTGATGCGATACATCATCCCGCCACCTTTCAAAGGTTAACCGGCTAAACGCGCCAGCAACAATTCACCCGCAGAGGAAACCGCACTCACGCGCGCCTCACGGCCTTGTGCCTGATAATCAATGTGTATTTCGACATCCGGGTCAGGAAGAACACCTGTACCTTGTTGTGGCCACTCCACCAGGCAGATGGCATCGTTGGCAAAATAATCGCGGATCCCCATAAACT < 2:499456/250‑1 CACCAGCCGTAGCGTTTGTGCATCTTTAGGCGTTCCAGAGCGAATCGCCTTCACCAGATTATTGCCGCTGAACAACAACGGCAGTCCCTGAATCACGCCCGTTTGTTTGATATCGAGCGCCACGGTGCGTTTGCTTTGATGGCTAAACGCATAATCAGGATCGCCAATAAAACTCAACGTTATCCGCGCCTGTTGATTACCGTTAGAAACCTGAATATCAGAGAGCGTCGCGGCACCCACCGGCGTGCACAGCAGCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_007779/4401041‑4400783‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagcagcagcGTCGCTACCAACCAATTTCTGATGCGATACATCATCCCGCCACCTTTCAAAGGTTAACCGGCTAAACGCGCCAGCAACAATTCACCCGCAGAGGAAACCGCACTCACGCGCGCCTCACGGCCTTGTGCCTGATAATCAATGTGTATTTCGACATCCGGGTCAGGAAGAACACCTGTACCTTGTTGTGGCCACTCCACCAGGCAGATGGCATCGTTGGCAAAATAATCGCGGATCCCCATAAACT < NC_007779/4400779‑4400536 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |