New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1086531 =	32 (0.690)	3 (0.070)	3/278	7.1	8.5%	coding (1215/2424 nt)	pgaA	biofilm adhesin polysaccharide PGA secretin; OM porin; poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein
	?	CP009273	1086560 =	34 (0.760)					coding (1186/2424 nt)	pgaA	biofilm adhesin polysaccharide PGA secretin; OM porin; poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTGCACGAGGCCAACCGCGGGCTTGTAACACACTCGCGTAATCAATGCGCAGTCCCTGATTTCCTGGTGCGTTATAAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGTGACAGTTAGCGCGCCCGGATAATTTTCACTCTCCAGGTGGCTGTAAAAG  >  CP009273/1086386‑1086672                                                                                                                                                  |                                                                                                                                              ctgcACGAGGCCAACCGCGGGCTTGTAACACACTCGCGTAATCAATGCGCAGTCCCTGATTTACTGGCGCGTTATAAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGaa                                                                                                                                            >  1:741986/1‑149 (MQ=255)    cACGAGGCCAACCGCGGGCTTGTAACACACTCGCGTAATCAATGCGCAGTCCCTGATTTCCTGGTGCGTTATAAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGc                                                                                                                                         <  1:465227/149‑1 (MQ=255)       tcgggtaaCCGGGGGCGTGCAACCCACCCGCGTAATCCACGCGCAGTCCCTGATTTCTTTGTGCGTTATAAGCAAGCTCTCGGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGcccc                                                                                                                                      <  1:315409/143‑1 (MQ=255)         ggCCAACCGCGGGCTTGTAACACACTCGCGTAATCAATGCGCAGTCCCTGATTTCCTGGTGCGTTATAAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATg                                                                                                                                          <  2:27016/143‑1 (MQ=255)              aCCGCGGGCTTGTAACACACTCGCGTAATCAATGCGCAGTCCCTGATTTCCTGGTGCGTTATAAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAAcc                                                                                                                               <  1:566779/149‑1 (MQ=255)                    ggCTTGTAACACACTCGCGTAATCAATGCGCAGTCCCTGTTTTCCTGGTTCGTTATCAGCAAGCTCGCTGGCTGTCATTTCAGCCGGAGGAAGATCATTACAATATTTTACTACGGTTGGGAGCAACGAATGCCCCCGTAAcc                                                                                                                               >  2:300301/1‑143 (MQ=255)                           aaCACACTCGCGTAATCAATGCGCAGTCCCTGATTTCCTGGTGCGTTATAAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAGGAAGCTCATTACTATATATTGCTACGGTTGATAGAAACGAATGCCCCTGTAACCAGGTATc                                                                                                                        >  2:482835/1‑143 (MQ=255)                                acTCGCGTAATCAATGCGCAGTCCCTGATTTCCTGGTGCGTTATAAGCAAGCCCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGCTCTCATTCg                                                                                                                   >  2:563005/1‑143 (MQ=255)                                  tCGCGTAATCAATGCGCAGTCCCTGATTCACTGCGTTGCTGTAAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAACCGAATGCCCCTGTAACCAGGTATCATTCggg                                                                                                                 >  2:153426/1‑143 (MQ=255)                                              tGCGCAGTCCCTGATTTCCGGGTGCGTTATAAGCAAGCTCTCTGGCGGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGc                                                                                                     >  2:411198/1‑143 (MQ=255)                                                            tttCCTGGTGCGTTATAAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTACCCg                                                                                       >  2:193209/1‑143 (MQ=255)                                                              tCCTGGTGCGTTATAAGCAAGCTCTCTGGCTGTCATTTCAGCCTAAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGaa                                                                                     <  2:605756/143‑1 (MQ=255)                                                                cTGGTGCGTTATAAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAggc                                                                             <  1:604903/149‑1 (MQ=255)                                                                 tGGTGCGTTATAAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTCACCGAAGGa                                                                                  >  2:61618/1‑143 (MQ=255)                                                                       gtgacacgcaagcGCCCTGGGTGTCAGTGCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGAGCCCATTAACCGAAGGAAAGGCGGCGAAg                                                                      <  1:627343/142‑1 (MQ=255)                                                                         tataAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCAGTCGGGATGCTCGTAGGCGTGCCCAGTAACCAGAGAGAGGGGGGCGAAGTa                                                                    >  1:319279/1‑149 (MQ=255)                                                                             agcaagcTCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAg                                                                      <  2:415182/143‑1 (MQ=255)                                                                                    tctctGGCTGTCATTTCAACCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGGGAAACGAATGCCCCTGTAACCAGGTATCATTCGAGCTGCTCGTAGGCGTGCCCATTAACCGACGGAAAGGCGGCGAAGTATTATTgggagg                                                         >  1:36304/1‑145 (MQ=255)                                                                                          gCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGt                                                   >  1:702971/1‑149 (MQ=255)                                                                                                          gAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTATAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGTGACAGTTAGCGCGccc                                   >  1:746441/1‑149 (MQ=255)                                                                                                                gATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGCGCCCATTAACCGCAGGACAGGCGGCGAAGTATTAATGGTATGTTGGGTGGCAGTTAGCGCGccc                                   <  2:238261/143‑1 (MQ=255)                                                                                                                   tctctcTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTCCTAATTAGGTGTTGGGTGACAGTTAGCGCGCCCGGa                                <  2:322239/138‑1 (MQ=255)                                                                                                                    aTTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTGTTAATGGCATGTTGGGTGACAGTTAGCGCGCCCGGAt                               >  2:416288/1‑143 (MQ=255)                                                                                                                     ttACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGAGGCGAAGTATTAATGGTATGTTGGGTGACAGTTAGCGCGCCCGGATAATTTTc                        >  1:614755/1‑149 (MQ=255)                                                                                                                        cTATATTTTGCTACGGTTGAAAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGGGACAGTTAGCGCGCCCGGATAATTTTCAct                     >  1:388161/1‑149 (MQ=255)                                                                                                                                   tACGGTTGAGAGAAACGAATGCCCCTGTAGCCAGGTATCATTCGGGATGCTCGGAGGCGTGACCATTAACCGAAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGTGACAGTTCGCGCGCCTGGATAATTTTGACTCTCCAGGTGGc          >  1:483317/1‑149 (MQ=255)                                                                                                                                   tACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGGAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGTGACAGTTAGCGCGCCCGGAGAATTTTCACTCCCCAGGTGGc          >  1:700668/1‑149 (MQ=255)                                                                                                                                       gTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGTGACAGTTAGCGCGCCCGGATAATTTTCACTATCCAGGTGGCTGTa      >  1:256142/1‑149 (MQ=255)                                                                                                                                           agagaAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGACAGGCGGCGAAGTATTAGTGGTATGTTGGGTGACAGTTAGCGCGCCCGGATAATTTTCACTCTCCAGGTGGCTg        >  2:598528/1‑143 (MQ=255)                                                                                                                                            gagaAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGTGGCGAAGTATTAATGGTATGTTGGGTGACAGTTAGCGCGCCCGGATAATTTTCACTCTCCAGGTGGCTGt       >  2:603951/1‑143 (MQ=255)                                                                                                                                               aaaCGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGTGACGGTTGGCGCGCCCGGACACTTTTCACTCTCCAAGTGGCAGCaaa    >  2:275714/1‑143 (MQ=255)                                                                                                                                                 aCGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGTGACAGTTAGCGCGCCCGGATAATTTTCACTCTCCAGGTGGCTGGAAAag  >  2:500736/1‑143 (MQ=255)                                                                                                                                                  |                                                                                                                                              CTGCACGAGGCCAACCGCGGGCTTGTAACACACTCGCGTAATCAATGCGCAGTCCCTGATTTCCTGGTGCGTTATAAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGTGACAGTTAGCGCGCCCGGATAATTTTCACTCTCCAGGTGGCTGTAAAAG  >  CP009273/1086386‑1086672

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.