New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1086531 =	32 (0.690)	3 (0.070)	3/278	7.1	8.5%	coding (1215/2424 nt)	pgaA	biofilm adhesin polysaccharide PGA secretin; OM porin; poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein
	?	CP009273	1086560 =	34 (0.760)					coding (1186/2424 nt)	pgaA	biofilm adhesin polysaccharide PGA secretin; OM porin; poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine export protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TCGCGTAATCAATGCGCAGTCCCTGATTTCCTGGTGCGTTATAAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGTGACAGTTAGCGCGCCCGGATAATTTTCACTCTCCAGGTGGCTGTAAAAGAGATCCGCAAGTTCTTCATCGGATAAATCCGGGG  >  CP009273/1086419‑1086706                                                                                                                                              |                                                                                                                                                   tCGCGTAATCAATGCGCAGTCCCTGATTCACTGCGTTGCTGTAAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAACCGAATGCCCCTGTAACCAGGTATCATTCggg                                                                                                                                                   >  2:153426/1‑143 (MQ=255)             tGCGCAGTCCCTGATTTCCGGGTGCGTTATAAGCAAGCTCTCTGGCGGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGc                                                                                                                                       >  2:411198/1‑143 (MQ=255)                           tttCCTGGTGCGTTATAAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTACCCg                                                                                                                         >  2:193209/1‑143 (MQ=255)                             tCCTGGTGCGTTATAAGCAAGCTCTCTGGCTGTCATTTCAGCCTAAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGaa                                                                                                                       <  2:605756/143‑1 (MQ=255)                               cTGGTGCGTTATAAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAggc                                                                                                               <  1:604903/149‑1 (MQ=255)                                tGGTGCGTTATAAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTCACCGAAGGa                                                                                                                    >  2:61618/1‑143 (MQ=255)                                      gtgacacgcaagcGCCCTGGGTGTCAGTGCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGAGCCCATTAACCGAAGGAAAGGCGGCGAAg                                                                                                        <  1:627343/142‑1 (MQ=255)                                        tataAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCAGTCGGGATGCTCGTAGGCGTGCCCAGTAACCAGAGAGAGGGGGGCGAAGTa                                                                                                      >  1:319279/1‑149 (MQ=255)                                            agcaagcTCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAg                                                                                                        <  2:415182/143‑1 (MQ=255)                                                   tctctGGCTGTCATTTCAACCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGGGAAACGAATGCCCCTGTAACCAGGTATCATTCGAGCTGCTCGTAGGCGTGCCCATTAACCGACGGAAAGGCGGCGAAGTATTATTgggagg                                                                                           >  1:36304/1‑145 (MQ=255)                                                         gCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGt                                                                                     >  1:702971/1‑149 (MQ=255)                                                                         gAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTATAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGTGACAGTTAGCGCGccc                                                                     >  1:746441/1‑149 (MQ=255)                                                                               gATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGCGCCCATTAACCGCAGGACAGGCGGCGAAGTATTAATGGTATGTTGGGTGGCAGTTAGCGCGccc                                                                     <  2:238261/143‑1 (MQ=255)                                                                                  tctctcTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTCCTAATTAGGTGTTGGGTGACAGTTAGCGCGCCCGGa                                                                  <  2:322239/138‑1 (MQ=255)                                                                                   aTTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTGTTAATGGCATGTTGGGTGACAGTTAGCGCGCCCGGAt                                                                 >  2:416288/1‑143 (MQ=255)                                                                                    ttACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGAGGCGAAGTATTAATGGTATGTTGGGTGACAGTTAGCGCGCCCGGATAATTTTc                                                          >  1:614755/1‑149 (MQ=255)                                                                                       cTATATTTTGCTACGGTTGAAAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGGGACAGTTAGCGCGCCCGGATAATTTTCAct                                                       >  1:388161/1‑149 (MQ=255)                                                                                                  tACGGTTGAGAGAAACGAATGCCCCTGTAGCCAGGTATCATTCGGGATGCTCGGAGGCGTGACCATTAACCGAAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGTGACAGTTCGCGCGCCTGGATAATTTTGACTCTCCAGGTGGc                                            >  1:483317/1‑149 (MQ=255)                                                                                                  tACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGGAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGTGACAGTTAGCGCGCCCGGAGAATTTTCACTCCCCAGGTGGc                                            >  1:700668/1‑149 (MQ=255)                                                                                                      gTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGTGACAGTTAGCGCGCCCGGATAATTTTCACTATCCAGGTGGCTGTa                                        >  1:256142/1‑149 (MQ=255)                                                                                                          agagaAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGACAGGCGGCGAAGTATTAGTGGTATGTTGGGTGACAGTTAGCGCGCCCGGATAATTTTCACTCTCCAGGTGGCTg                                          >  2:598528/1‑143 (MQ=255)                                                                                                           gagaAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGTGGCGAAGTATTAATGGTATGTTGGGTGACAGTTAGCGCGCCCGGATAATTTTCACTCTCCAGGTGGCTGt                                         >  2:603951/1‑143 (MQ=255)                                                                                                              aaaCGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGTGACGGTTGGCGCGCCCGGACACTTTTCACTCTCCAAGTGGCAGCaaa                                      >  2:275714/1‑143 (MQ=255)                                                                                                                aCGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGTGACAGTTAGCGCGCCCGGATAATTTTCACTCTCCAGGTGGCTGGAAAag                                    >  2:500736/1‑143 (MQ=255)                                                                                                                    aTGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGCAGGAAAGGCGGCGAGGTATTAATGGTATGTTGGGTGACAGTTAGCGCGCCCGGATAATTTTCACTCTCCAGGTGGCTGTACAAGAGAt                                >  2:2303/1‑143 (MQ=255)                                                                                                                       ccccTTCAACCAGGTTCCATTCGGGATTCCCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTATGAATGGTATGTTGGGTGACAGTTAGCGCGCCCGGATAATTTTCACTCTCCAGGTGGCTGTAAAAGAGATCCg                             <  2:285797/143‑1 (MQ=255)                                                                                                                         ccTGTAACCAGGTATCATTCGGGATGCTGGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGTGACAGTTAGCGCGCCCGGATAATTTTCACTCTCCAGGTGGCTGTAAAAGAGATCCGCAAGttct                     <  1:694240/149‑1 (MQ=255)                                                                                                                          cTGTAACCAGGTATCATTCGGGATCCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGTGCAAGTTAGCGCGCTCGGATAAACTTCACTCTTCAGGTGGCTGTAAAAGAGATCCGCaa                          <  2:410535/143‑1 (MQ=255)                                                                                                                               aCCAGGTATGATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGTGACAGTTAGCGCGCCCGGATAATTTTCACTCTCCAGGTGGCTGTAAAAGAGATCCGCAAGTTCTTCATCg               <  1:442321/149‑1 (MQ=255)                                                                                                                               aCCAGGTAGCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGTGACAGTTAGCGCGCCCGGATAATTTTCACTCTCCAGGTGGCTGTAAAAGAGATCCGCAAGTTCTTCATCg               <  1:366389/149‑1 (MQ=255)                                                                                                                               aCCACGTATCATGCGAGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGTGACAGTTAGCGCGCCCGGATAATTTTCACTCTCCAGGTGGCTGTAAAAGAGATCCGCAAGTTCTTCATCg               <  1:257248/149‑1 (MQ=255)                                                                                                                                  aGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGTGACAGTTAGCGCGCCCGGATAATTTTCACTCTCCAGGTGGCTGTAAAAGAGATCCGCAAGTTCTTCATCGGAt            >  1:436212/1‑149 (MQ=255)                                                                                                                                  aGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGTGACAGTTAGCGCGCCCGGATAATTTTCACTCTCCAGGTGGCTGTAAAAGAGATCCGCAAGTTCTTCATCGGAt            <  1:341604/149‑1 (MQ=255)                                                                                                                                     tATCATTCGGGATGCTCGTAGGCGTGCCCAGTAACCGAAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGTGACAGTTAGCGCGCCCGGATAATTTTCACTCTCCAGGTGGCTGTAAAAGAGATCCGCAAGTTCTTCATCg               <  2:217295/143‑1 (MQ=255)                                                                                                                                          ttCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGTGACAGTTAGCGCGCCCGGATAATTTTCACTCTCCAGGTGGCTGTAAAAGAGATCCGCAAGTTCTTCATCGGATAAATCCgg    <  1:217466/149‑1 (MQ=255)                                                                                                                                          ttCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGTGACAGTTAGCGCGCCCGGATAATTTTCACTCTCCAGGTGGCTGTAAAAGAGATCCGCAAGTTCTTCATCGGATAAATCCgg    >  1:682835/1‑149 (MQ=255)                                                                                                                                            cGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGTGACAGTTAGCGCGCCCGGATAATTTTCACTCTCCAGGTGGCTGTAAAAGAGATCCGCAAGTTCTTCATCGGATAAATCCgggg  <  1:69332/149‑1 (MQ=255)                                                                                                                                              |                                                                                                                                                   TCGCGTAATCAATGCGCAGTCCCTGATTTCCTGGTGCGTTATAAGCAAGCTCTCTGGCTGTCATTTCAGCCTGAGGAAGATCATTACTATATTTTGCTACGGTTGAGAGAAACGAATGCCCCTGTAACCAGGTATCATTCGGGATGCTCGTAGGCGTGCCCATTAACCGAAGGAAAGGCGGCGAAGTATTAATGGTATGTTGGGTGACAGTTAGCGCGCCCGGATAATTTTCACTCTCCAGGTGGCTGTAAAAGAGATCCGCAAGTTCTTCATCGGATAAATCCGGGG  >  CP009273/1086419‑1086706

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.