New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 2825238 =48 (1.030)3 (0.070) 3/274 7.0 6.6% coding (411/1515 nt) norR anaerobic nitric oxide reductase DNA‑binding transcriptional activator
?CP009273 2825280 = 40 (0.910)coding (369/1515 nt) norR anaerobic nitric oxide reductase DNA‑binding transcriptional activator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGAATCAAACCGTCATAGGGATCGGGCAATTCGCTG  >  CP009273/2825097‑2825376
                                                                                                                                             |                                                                                                                                           
cTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCCCTTCGTCGCTGAAAACATCGAACTGATCgg                                                                                                                                      >  1:451791/1‑149 (MQ=255)
 tGTTTCCCCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCggg                                                                                                                                     <  1:607183/149‑1 (MQ=255)
   tttCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGAt                                                                                                                                         >  2:449161/1‑143 (MQ=255)
    ttCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTACAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTGGCTCTTCGTCGCTGCAAACATCGAACTGATc                                                                                                                                        >  2:209250/1‑143 (MQ=255)
     tCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGCTCGGGCTGc                                                                                                                                 >  1:329996/1‑149 (MQ=255)
       tccGCTTCAGAGGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCggg                                                                                                                                     <  2:528020/142‑1 (MQ=255)
        ccGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGGGCAGCAATCAGCCGTAGCTCTTCGTCCCTGAAAACAGCGAACAGCACGGGc                                                                                                                                    >  2:235959/1‑143 (MQ=255)
        ccGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAAAGCACCGCTCGCCAGCGCAGCCATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGc                                                                                                                                    <  2:150622/143‑1 (MQ=255)
            ttCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGATTTCCAGTTGTTCAATCAGCACCGACTTGCTTAACGCTCCCGCCGCCAGCGCAGAGATCAGCCGTAGCTCTTCGTCGCTCGCAACACAGAACGGAACGggcggcc                                                                                                                                >  2:15496/1‑142 (MQ=255)
             tCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAAGCAGTAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTc                                                                                                                         <  1:775377/149‑1 (MQ=255)
                       tGGCATCGCCTGGCAGCCTATCTTCGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGc                                                                                                                     <  2:147590/143‑1 (MQ=255)
                           aTCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAAAAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTTTTCGTCGATGAAAACATCGAACTAATCGGGCTGCATCCGGACGAGCGTCAGTacgc                                                                                                           >  1:352452/1‑149 (MQ=255)
                            tCGCCTGGCAGCATATTCTAGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGcc                                                                                                          >  1:574097/1‑149 (MQ=255)
                             cGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTCGCCCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCAAGCGTCAGTGCGCCg                                                                                                         >  1:199875/1‑149 (MQ=255)
                                 tGGCAGCATATCGTGGCTTGTCAGTTGTTCAATCAGCAACTCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCACCCCGTCGAGCGTCAGTGCGCCGATCa                                                                                                    <  1:425211/149‑1 (MQ=255)
                                  gcgagcaTATTCTGGCTTTCCAGTTGTTTAGTAAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGTCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAg                                                                                                   <  1:93031/146‑1 (MQ=255)
                                   gacgcaTATTCTGCCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAgg                                                                                                  <  1:236523/146‑1 (MQ=255)
                                     agcaTATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGAt                                                                                                      <  2:634840/143‑1 (MQ=255)
                                             cTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCgg                                                                                        <  1:205473/149‑1 (MQ=255)
                                                gCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCaa                                                                                     >  1:88982/1‑149 (MQ=255)
                                                       aGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTAGCCCGGCAAACAATgg                                                                              <  1:326321/149‑1 (MQ=255)
                                                            ttCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCCGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGCAGAc                                                                         >  1:421350/1‑149 (MQ=255)
                                                               aaTCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGGTCGGGTTTTGCCCGGCAACCAATGGCa                                                                            >  2:406403/1‑143 (MQ=255)
                                                                  cAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGCAGAc                                                                         >  2:187784/1‑143 (MQ=255)
                                                                     cAACGCATTGCTTAACGCTCCCGCCGACAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGGCAGTGCGCCGATCAGGGTTTGCCCGGCAAAGCATGGCAGACCAACGCAgc                                                                >  1:621942/1‑148 (MQ=255)
                                                                      aaCGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCTGGCGGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGCAGACCAAc                                                                     <  2:362291/143‑1 (MQ=255)
                                                                      aaCCCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCGCCTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGATCGTCAGTGCGCCGATCAGGTTTTGCTCGGCAAACAATGGCAGACCAAc                                                                     <  2:44898/143‑1 (MQ=255)
                                                                       aCGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACg                                                                    >  2:579896/1‑143 (MQ=255)
                                                                          cATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAg                                                                 <  2:626618/143‑1 (MQ=255)
                                                                                ttAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGa                                                           >  2:713656/1‑143 (MQ=255)
                                                                                      cTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGActc                                               <  1:606836/149‑1 (MQ=255)
                                                                                       cctccgcgccAGCGCAGCAATCAGCCGTTGCTCGTCGTCGCTGAAAACATCGGACTGATCGGGCTGCAGCCCGTCGAGCGTCAGGGCGCCGATCAGGTTTTGCCCGGCAAACAATGGCAGCCCAACGCAGGCGTGAACCTTCa                                                    <  2:261700/137‑1 (MQ=255)
                                                                                         ccgccgCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCGGa                                                  >  2:513036/1‑143 (MQ=255)
                                                                                                cAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGGACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCt                                           <  2:327880/143‑1 (MQ=255)
                                                                                                 aGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAgg                                    >  1:626049/1‑149 (MQ=255)
                                                                                                 aGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAgg                                    >  1:455067/1‑149 (MQ=255)
                                                                                                      agcaATCAGCCGTAGCTCTTCGTCGCTGAAATCATCGAACTGATCGGGTTGCATCTCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAg                                     <  2:243837/143‑1 (MQ=255)
                                                                                                       gcaATCAGCCGGAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAgg                                    <  2:274309/143‑1 (MQ=255)
                                                                                                          aTCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGAATCAAAcc                           <  1:434005/149‑1 (MQ=255)
                                                                                                              gCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCCGGCGTGAACCTTCAGACTCACCTGCCCAGGAATCaaa                             <  2:64902/143‑1 (MQ=255)
                                                                                                                     cgctTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGAATCAAACCGTCAt                      <  2:397334/141‑1 (MQ=255)
                                                                                                                      tctTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGACTCAAACCGTCATAGGGATc               >  1:134649/1‑149 (MQ=255)
                                                                                                                      tctTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACCCTCCTGCCCAGGAATCAAACCGTCATa                     >  2:520324/1‑143 (MQ=255)
                                                                                                                       ctTCGGCGCTGAAAACAGCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCTGGAATCAAACCGTCATAGGGATCg              <  1:588971/149‑1 (MQ=255)
                                                                                                                         tcgtcgCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGAATCAAACCGTCATAGGGATCggg            >  1:150357/1‑149 (MQ=255)
                                                                                                                                tGAAAACATCGAACTGCACGGGATGCACCCCTGCTAGTGAAAATGGCGGTAGCATGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGAATCAAACCGTCATAGGGATCGGGCAATTCg     <  1:181505/149‑1 (MQ=255)
                                                                                                                                   aaaCATTGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGAATCAAACCGTCATAGGGATCGGGCAATTCGCTg  >  1:526032/1‑149 (MQ=255)
                                                                                                                                       aTCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGAAGCAAACCGTCATAGGGCTCGGGCAATTCGc    >  2:151613/1‑143 (MQ=255)
                                                                                                                                        tCGACCTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGAGCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGAATCAAACCGTCATAGGGATCGGGCAATTCGCt   <  2:557835/143‑1 (MQ=255)
                                                                                                                                             |                                                                                                                                           
CTGTTTCACCGCTTCAAACGGCGTGGCATCGCCTGGCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCGATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGAATCAAACCGTCATAGGGATCGGGCAATTCGCTG  >  CP009273/2825097‑2825376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.