New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2825238 =	48 (1.030)	3 (0.070)	3/274	7.0	6.6%	coding (411/1515 nt)	norR	anaerobic nitric oxide reductase DNA‑binding transcriptional activator
	?	CP009273	2825280 =	40 (0.910)					coding (369/1515 nt)	norR	anaerobic nitric oxide reductase DNA‑binding transcriptional activator
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGAATCAAACCGTCATAGGGATCGGGCAATTCGCTGTCTGCGGGAAAGCGCACCACATCCCCGGCGCGGGCAATCGCTTCCAGCCGTG  >  CP009273/2825132‑2825428                                                                                                                                                      |                                                                                                                                                     gacgcaTATTCTGCCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAgg                                                                                                                                                      <  1:236523/146‑1 (MQ=255)           cTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCgg                                                                                                                                            <  1:205473/149‑1 (MQ=255)              gCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCaa                                                                                                                                         >  1:88982/1‑149 (MQ=255)                     aGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTAGCCCGGCAAACAATgg                                                                                                                                  <  1:326321/149‑1 (MQ=255)                          ttCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCCGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGAc                                                                                                                             >  1:421350/1‑149 (MQ=255)                             aaTCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCG‑GTCGGGTTTTGCCCGGCAACCAATGGCa                                                                                                                                >  2:406403/1‑143 (MQ=255)                                cAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGAc                                                                                                                             >  2:187784/1‑143 (MQ=255)                                   cAACGCATTGCTTAACGCTCCCGCCGACAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGGCAGTGCGCCG‑ATCAGGGTTTGCCCGGCAAAGCATGGCAGACCAACGCAgc                                                                                                                    >  1:621942/1‑148 (MQ=255)                                    aaCGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCTGGCGGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAAc                                                                                                                         <  2:362291/143‑1 (MQ=255)                                    aaCCCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCGCCTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGATCGTCAGTGCGCCG‑ATCAGGTTTTGCTCGGCAAACAATGGCAGACCAAc                                                                                                                         <  2:44898/143‑1 (MQ=255)                                     aCGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACg                                                                                                                        >  2:579896/1‑143 (MQ=255)                                        cATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAg                                                                                                                     <  2:626618/143‑1 (MQ=255)                                              ttAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGa                                                                                                               >  2:713656/1‑143 (MQ=255)                                                    cTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGActc                                                                                                   <  1:606836/149‑1 (MQ=255)                                                     cctccgcgccAGCGCAGCAATCAGCCGTTGCTCGTCGTCGCTGAAAACATCGGACTGATCGGGCTGCAGCCCGTCGAGCGTCAGGGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGCCCAACGCAGGCGTGAACCTTCa                                                                                                        <  2:261700/137‑1 (MQ=255)                                                       ccgccgCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCGGa                                                                                                      >  2:513036/1‑143 (MQ=255)                                                              cAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGGACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCt                                                                                               <  2:327880/143‑1 (MQ=255)                                                               aGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAgg                                                                                        >  1:626049/1‑149 (MQ=255)                                                               aGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAgg                                                                                        >  1:455067/1‑149 (MQ=255)                                                                    agcaATCAGCCGTAGCTCTTCGTCGCTGAAATCATCGAACTGATCGGGTTGCATCTCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAg                                                                                         <  2:243837/143‑1 (MQ=255)                                                                     gcaATCAGCCGGAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAgg                                                                                        <  2:274309/143‑1 (MQ=255)                                                                        aTCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGAATCAAAcc                                                                               <  1:434005/149‑1 (MQ=255)                                                                            gCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCCGGCGTGAACCTTCAGACTCACCTGCCCAGGAATCaaa                                                                                 <  2:64902/143‑1 (MQ=255)                                                                                   cgctTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGAATCAAACCGTCAt                                                                          <  2:397334/141‑1 (MQ=255)                                                                                    tctTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGACTCAAACCGTCATAGGGATc                                                                   >  1:134649/1‑149 (MQ=255)                                                                                    tctTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACCCTCCTGCCCAGGAATCAAACCGTCATa                                                                         >  2:520324/1‑143 (MQ=255)                                                                                     ctTCGGCGCTGAAAACAGCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCTGGAATCAAACCGTCATAGGGATCg                                                                  <  1:588971/149‑1 (MQ=255)                                                                                       tcgtcgCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGAATCAAACCGTCATAGGGATCggg                                                                >  1:150357/1‑149 (MQ=255)                                                                                              tGAAAACATCGAACTGCACGGGATGCACCCCTGCTAGTGAAAATG‑GCGGTAGCATGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGAATCAAACCGTCATAGGGATCGGGCAATTCg                                                         <  1:181505/149‑1 (MQ=255)                                                                                                 aaaCATTGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGAATCAAACCGTCATAGGGATCGGGCAATTCGCTg                                                      >  1:526032/1‑149 (MQ=255)                                                                                                     aTCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGAAGCAAACCGTCATAGGGCTCGGGCAATTCGc                                                        >  2:151613/1‑143 (MQ=255)                                                                                                      tCGACCTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCG‑AGCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGAATCAAACCGTCATAGGGATCGGGCAATTCGCt                                                       <  2:557835/143‑1 (MQ=255)                                                                                                              aTCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGAATCAAACCGTCATAGGGATCGGGCAATTCGCTGTCTGCgg                                               >  2:444192/1‑143 (MQ=255)                                                                                                                  ggCTGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCATGAAGCAAACCGTCATAGGGATCGGGCAATTCGCTGTCTGCGGGaaa                                           <  2:289282/143‑1 (MQ=255)                                                                                                                  ggCTGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGAATCAAACCGTCATAGGGATCGGGCAATTCGCTGTCTGCGGGaaa                                           <  2:514552/143‑1 (MQ=255)                                                                                                                         tCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGAATCAAACCGTCATAGGGATCGGGCAATTCGCTGTCTGCGGGAAAGCGCACCACATcc                              >  1:655556/1‑149 (MQ=255)                                                                                                                           ccGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGAATCAAACCGTCATAGGGATCGGGCAATTCGCTGTCTGCGGGAAAGCGCACCACATcccc                            <  1:787668/149‑1 (MQ=255)                                                                                                                                    gTCAGTGCGCCG‑AGCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGAATCAAACCGTCATAGGGATCGGGCAATTCGCTGTCTGCGGGAAAGCGCACCACATCCCCGGCGCGGGc                   >  1:538928/1‑149 (MQ=255)                                                                                                                                       aGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGACGTGAACATTCAGACTCTCCTGCCCAGGAATCAAACCGCCATAGGGATCGGGCAATTCCCTGTCTGCGGGAAAGCCTACCACACCCCCGGcccg                      >  2:440740/1‑143 (MQ=255)                                                                                                                                        gTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGGGAACCTTCAGACTCTCCTGCCCAGGAATCAAACCGTCATAGGGATCGGGCAATTCGCTGTCTGCGGGAAAGCGCACCACATCCCCGGCGCgg                     <  2:134374/143‑1 (MQ=255)                                                                                                                                          gcgcCG‑ATCAGGTTTTACCAGATAATCAATTGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGAATCAAACCGTCATAGGGATCGGGCAATTCGCTGTCTGCGGGAAAGCGCACCACATCCCCGGCGCGGGCAATCGc             <  1:733878/149‑1 (MQ=255)                                                                                                                                             ccG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGAATCAAACCGTCATAGGGATCGGGCAATTCGCTGTCTGCGGGAAAGCGCACCACATCCCCGGCGCGGGCAATCGCTTc          <  1:645318/149‑1 (MQ=255)                                                                                                                                               g‑ATCAGGTTTTGCCCGGCAAACAAGGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGAATCGAACCGTCATAGGGATCGGGCAATTCGCTGTCTGCGGGAAAGCGCACCACATCCCCGGCGCGGGCAATCGCTTCCa        >  1:591482/1‑149 (MQ=255)                                                                                                                                                   cAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGAATCAAACCGTCATAGGGATCGGGCAATTCGCTGTCTGCGGGAAAGCGCACCACATCCCCGGCGCGGGCAATCGCtt           <  2:78727/143‑1 (MQ=255)                                                                                                                                                      gTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGAATCAAACCGTCATAGGGATCGGGCAATTCGCTGTCTGCGGGAAAGCGCACCACATCCCCGGCGCGGGGAATCGCTTCCAGCCGTg  >  1:72420/1‑149 (MQ=255)                                                                                                                                                      gTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGAATCAAACCGTCATAGGGATCGGGCAATTCGCTGTCTGCGGGAAAGCGCACCACATCCCCGGCGCGGGCCATCGCTTCCa        >  2:659282/1‑143 (MQ=255)                                                                                                                                                      |                                                                                                                                                     GCAGCATATTCTGGCTTTCCAGTTGTTCAATCAGCAACGCATTGCTTAACGCTCCCGCCGCCAGCGCAGCAATCAGCCGTAGCTCTTCGTCGCTGAAAACATCGAACTGATCGGGCTGCATCCCGTCGAGCGTCAGTGCGCCG‑ATCAGGTTTTGCCCGGCAAACAATGGCAGACCAACGCAGGCGTGAACCTTCAGACTCTCCTGCCCAGGAATCAAACCGTCATAGGGATCGGGCAATTCGCTGTCTGCGGGAAAGCGCACCACATCCCCGGCGCGGGCAATCGCTTCCAGCCGTG  >  CP009273/2825132‑2825428

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.