| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | CP009273 | 3,360,110 | Δ10,684 bp | IS5‑mediated | [yhcE]–sspA | [yhcE], yhcF, yhcG, yhcH, nanK, nanE, nanT, nanA, nanR, dcuD, sspB, sspA |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP009273 | 3358981–3360109 | 3370793 | 10685–11813 | 48 [44] | [0] 90 | insH1–sspA | insH1, yhcE, yhcF, yhcG, yhcH, nanK, nanE, nanT, nanA, nanR, dcuD, sspB, sspA |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3360109 | NA (NA) | 89 (1.020) | 69/288 | 0.2 | 100% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 3370794 = | 0 (0.000) | intergenic (‑15/+380) | sspA/rpsI | stringent starvation protein A, phage P1 late gene activator, RNAP‑associated acid‑resistance protein, inactive glutathione S‑transferase homolog/30S ribosomal subunit protein S9 | |||||
TTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGA > CP009273/3370646‑3370942 | cgggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctaatatcagggacttgttcgccccttcca < 2:1216140‑M2/1‑1 (MQ=255) ggacaagaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATa > 1:1222364‑M2/147‑149 (MQ=255) gaccagaaaagagattttcttgtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttggtcgcaccttccATAg > 2:563324‑M2/146‑149 (MQ=255) gaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatagctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGa > 2:1044054‑M2/141‑149 (MQ=255) atctcttttctggtctgacggcgcttactgctgaattcactgtcggcgcaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAAttt > 2:405674‑M2/137‑149 (MQ=255) ctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtcagttgatgactcatgatgaaccctgttctatggctccagatgacaaacaggatctcatatcagggacttggtcgcaccttccATAGTCAGAAttttt > 1:518543‑M2/135‑149 (MQ=255) cttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggatccagatgacaaacatgatctcatatcagggacttgttcgcaccttccgtacagcaactcaaccg > 2:1081614‑M2/133‑135 (MQ=255) tttctggtctgccggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTg < 1:806945‑M2/19‑1 (MQ=255) tctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCt < 1:222483‑M2/21‑1 (MQ=255) ctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTa < 2:508061‑M2/22‑1 (MQ=255) tggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcaggggcttgttcgcaccttccATAGTCAGAATTTTTACTGCTAc > 1:821841‑M2/127‑149 (MQ=255) tggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTAc < 2:1312679‑M2/23‑1 (MQ=255) gtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCa > 1:276854‑M2/125‑149 (MQ=255) gtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttagcacgtatcAAAGTCAGAATTTTTACTCATaccg > 2:1000438‑M2/125‑148 (MQ=255) ctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGc < 2:928752‑M2/27‑1 (MQ=255) gacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggactttttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGcca < 1:1044054‑M2/29‑1 (MQ=255) tactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGc > 2:1428228‑M2/112‑149 (MQ=255) ctgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCa < 2:844004‑M2/40‑1 (MQ=255) ctgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagacgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATATTTACTGCTACCAGCCACCAGGTGGCCa < 1:357414‑M2/40‑1 (MQ=255) tgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAg < 1:210995‑M2/41‑1 (MQ=255) gctgaattcactgtcggcgaagcgaagttgatgactcatgatgaaccctgtgctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGt < 2:1292083‑M2/42‑1 (MQ=255) tgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCa < 1:1289462‑M2/44‑1 (MQ=255) gaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAg < 1:36213‑M2/45‑1 (MQ=255) aattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGa > 1:1274122‑M2/104‑149 (MQ=255) aattcactgtcggcgaaggtaagttgatgactcatgatgaacactgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGa > 2:1429524‑M2/104‑149 (MQ=255) attcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTcagta > 2:138154‑M2/103‑147 (MQ=255) attcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGaa < 1:1115510‑M2/47‑1 (MQ=255) ttcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacagacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAg < 2:1025614‑M2/48‑1 (MQ=255) ttcactgtcggcgaaggtaagttgatgactcatgatgaaccatgttctatggttccagatgacacacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAg < 2:310168‑M2/48‑1 (MQ=255) ccctgccgtcggaagtacgttgctgtcccaggattaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGtt < 2:368533‑M2/50‑1 (MQ=255) ctgtcgcgcaagctaagttgattactcatcatgaaccctgttctatggctccagatgacaaccatgacctcatatcagggatttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTtgt < 1:589132‑M2/52‑1 (MQ=255) gtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTa > 1:55217‑M2/96‑111 (MQ=255) gtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTa < 2:55217‑M2/16‑1 (MQ=255) gtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTgtgt < 2:1222364‑M2/54‑1 (MQ=255) tcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTATCAGCCACCAGGTGGCCAGTCAGAAGTTGGGtt > 2:404915‑M2/95‑149 (MQ=255) ggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTAc > 1:620486‑M2/93‑149 (MQ=255) cgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTAccc > 2:861820‑M2/91‑149 (MQ=255) atgtaagttgatgactcatgcggaaccctgttctatggctccagatgacaaacaggatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAAt < 2:658128‑M2/62‑1 (MQ=255) gtgagtagatgactcatgatgtaacctgtcctgtggatacagatgacagacatgctcttatatcagggacttgttcgcgccttacATAGTCGGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATaa < 2:348390‑M2/64‑1 (MQ=255) taagttgatgactcatgatgaaccctgttctatggctccagatgccaaacatgatctcatatcagggtcttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAg > 1:727239‑M2/85‑149 (MQ=255) taagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAAtttt < 1:141801‑M2/14‑1 (MQ=255) taagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAAtttt > 2:141801‑M2/85‑98 (MQ=255) taagttgatgactcatgatgaacactgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGTATTTTTAATGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAg < 2:914107‑M2/65‑1 (MQ=255) gttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGaa < 1:635037‑M2/68‑1 (MQ=255) ttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCagtcagacgttgtgttgtggtgttctgttg > 1:675107‑M2/81‑135 (MQ=255) gatgattcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGa < 2:861616‑M2/71‑1 (MQ=255) gaggcctcctgatggaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGa < 2:752100‑M2/71‑1 (MQ=255) tcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGActctct > 1:569574‑M2/73‑149 (MQ=255) tcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGActctct > 1:77821‑M2/73‑149 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTCCCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATCAGGAACGACTCGCTTTg > 1:400689‑M2/70‑149 (MQ=255) tgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTg > 2:648561‑M2/70‑149 (MQ=255) gatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGt > 1:1192141‑M2/69‑149 (MQ=255) ccatctccctgttcgatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGGAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGt < 2:1032604‑M2/81‑1 (MQ=255) tgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTc < 2:77821‑M2/83‑1 (MQ=255) tgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTc < 1:828670‑M2/83‑1 (MQ=255) tgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAATCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGCCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTc > 2:1241993‑M2/67‑149 (MQ=255) cctgttctatggctccagatgacaaacatgatatcataacagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGaaaa > 2:1330136‑M2/62‑149 (MQ=255) ctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTTTTCGAAAAt > 1:947577‑M2/61‑149 (MQ=255) ctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAAt > 1:233744‑M2/61‑149 (MQ=255) tgttctatggctccagatgacaaacattatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATc > 2:741401‑M2/60‑149 (MQ=255) ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCAACAGGTGGCCAGGCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATcaa < 1:1000438‑M2/92‑1 (MQ=255) atggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATcaaacaa > 2:1074006‑M2/54‑149 (MQ=255) tccaggctgcaaacatgatctcatagcagggacttgtgcgcatcttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGTTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTTTTCGAAAATCAAACAAAAAAt < 2:156513‑M2/101‑1 (MQ=255) cagatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGa < 1:436117‑M2/103‑1 (MQ=255) agatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTATGTAAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAg < 1:1429524‑M2/104‑1 (MQ=255) gatgacaaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGc > 1:856979‑M2/45‑149 (MQ=255) caaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATAc < 1:405674‑M2/110‑1 (MQ=255) aaacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATAcc < 1:798707‑M2/111‑1 (MQ=255) aaacatcatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATAcc < 1:644402‑M2/111‑1 (MQ=255) aacatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATAccc > 2:426586‑M2/38‑149 (MQ=255) acatgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCg > 1:516542‑M2/37‑149 (MQ=255) atgatctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGAc > 1:669284‑M2/35‑149 (MQ=255) ctcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGACCAGTCAGAAGTTGGGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAGTCAAACAAAAAATGCGAAGTACCCGACCTTTg > 2:1289078‑M2/30‑149 (MQ=255) tcatatcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTgg > 2:1125716‑M2/29‑149 (MQ=255) atcagggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAg < 1:563324‑M2/125‑1 (MQ=255) agggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGaaa > 2:629367‑M2/22‑149 (MQ=255) ggacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAAt > 2:978099‑M2/20‑149 (MQ=255) gacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAAtt < 1:1280263‑M2/131‑1 (MQ=255) gacttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAAtt > 2:218697‑M2/19‑149 (MQ=255) gacttgttcgaaccttccATAGTCAGAATTTTTACTGCTACCAGTCTAAAGGTGGCCAGTCAGAAGTTGTGGTACCCAATAAAGCCCGGCTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAAtt < 1:1428228‑M2/131‑1 (MQ=255) ttgttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAAAAAAACAAAAAATGAGCAATACGTTACATTTTGGCAGACAATTGga < 2:1405267‑M2/134‑1 (MQ=255) ttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACGAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAACCAAAAAATGAGCAATACCCGACATTTGGGCAGAaaattgaagga > 1:970756‑M2/13‑144 (MQ=255) ttcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGgatga > 2:1232888‑M2/13‑149 (MQ=255) tcgcaccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCCGAAAATTGgatgat > 2:586240‑M2/12‑149 (MQ=255) caccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTCCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGt > 1:1393884‑M2/9‑149 (MQ=255) ccttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGttt > 1:1124490‑M2/7‑149 (MQ=255) ttccATAGTCAGAATTTTTTCTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTCACCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTAc < 1:342877‑M2/145‑1 (MQ=255) ttccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTAc < 1:308030‑M2/145‑1 (MQ=255) ccATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCa < 1:1074006‑M2/147‑1 (MQ=255) ataGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATAGGATGATAGTTTACCAGa > 2:1119206/1‑149 (MQ=255) | TTGTCCTTTTCCACGTGTTCGATCTCGAAACTTACACCTTTCTCAGCCAGCACAATGCGGACCTGATGGCTATAGATGTCAGTAGGACCGGAAAACAGCGTCATTACCGAACGTTTGTTGGCAGCGACAGCCATGAAAACCTCCAGGTATAGTCAGAATTTTTACTGCTACCAGCCACCAGGTGGCCAGTCAGAAGTTGTGTTACCCAATAAGGAACGACTCTCTTTGTTCGAAAATCAAACAAAAAATGAGCAATACCCGACATTTGGGCAGAAAATTGGATGATAGTTTACCAGA > CP009273/3370646‑3370942 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |