New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2811114 =	51 (1.130)	5 (0.120) +TACGGAGAAT	4/276	6.0	11.6%	intergenic (‑252/+29)	yqaB/argQ	fructose‑1‑P and 6‑phosphogluconate phosphatase/tRNA‑Arg
	?	CP009273	2811556 =	31 (0.690)					intergenic (‑62/+1)	argZ/argY	tRNA‑Arg/tRNA‑Arg
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAGAAATGAGATATTTTTGAAGGAAATTTTTTGGAGAAGATGGTGCATCCGGGAGGATGACTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAAACTTATTCTACTGCTGATATTGATACCGCTAC  >  CP009273/2810970‑2811260                                                                                                                                                 |                                                                                                                                                   tAGAAATGAGATATTTTTGAAGGAAATTTTTTGGAGAAGATGGTGCATCCGGGAGGATGACTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCtt                                                                                                                                                <  2:457178/149‑1 (MQ=255)  aGAAATGAGATATTTTTGAAGGAAATTTTTTGGAGAAGATGGTGCATCCGGGAGGATGACTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATGTCTTCGATACCTTc                                                                                                                                               >  1:645560/1‑149 (MQ=255)  aGAAATGAGATATTTTTGAAGGAAATTTTTTGGAGAAGATGGTGCATCCGGGAGGATGACTCACTAACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTCATACCGCTATCCCTTCGATACCTTc                                                                                                                                               >  1:121509/1‑149 (MQ=255)     aaTGAGATATTTTTGAAGGAAATTTTTTGGAGAAGATGGTGCATCCGGGAGGATGACTCACTGACGTTCGCCCCTCGGGCCGTTGCTGCCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCAtt                                                                                                                                            <  1:552024/149‑1 (MQ=255)      aTGAGATATTTTTGAAGGAAATTTTTTGGAGAAGATGGTGCATCCGGGAGGATGACTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTg                                                                                                                                           <  1:509454/149‑1 (MQ=255)         ggaTAGTTTGGAAGGAAAGTTTTTGGAGAAGATGGTGCATCCGGGAGGATGACTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCGGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTg                                                                                                                                        <  2:631907/148‑1 (MQ=255)         agaTATTTTTGAAGGAAATTTTTTGGAGAAGATGGTGCATCCGGGAGGATGACTCACTTACGTGCGCCCTTCTGGCCGAGGCTGGCAGAACGTCGTCCTTCGTGGGGCCTGCGGGTAGTACCGCTATCTCTTCGATACCTTCATTACta                                                                                                                                        >  2:231083/1‑148 (MQ=255)           atatTTTTGAAGGAAATTTTTTGGAGTAGATGGTGCATCCGGGAGGATGACTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGaa                                                                                                                                      <  1:528972/149‑1 (MQ=255)                           tttgttGGAGAAGATGGTGCATCCGGGAGGATGACTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATg                                                                                                                      <  2:135064/149‑1 (MQ=255)                               ttGGAGAAGATGGTGCATCCGGGAGGATGACTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGc                                                                                                                  <  1:603169/149‑1 (MQ=255)                                       gggggggCAGCCGGGAGGAGGGCTCACTGACGCTCGCGCTTCGGGCCGTTTCGGTCGCAACGTTAGCCTTCTTGGGTCCTGCGGTTAATTCCGCTATCTCTTCGATTCCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGgga                                                                                                          <  2:331379/143‑1 (MQ=17)                                       gaTGGTGCATCCGGGAGGATGACTCACTGACGGTCGCACTGCGGGCGGTTGCTGGCGCAACGTTATCCTTCGTGGTGCCTGCGGCTAGTACCGCGATCTCTTCGATACCTTCATAGCTGAGGGTTACGGAGCCTACGGTGCACCCGgga                                                                                                          >  2:404594/1‑149 (MQ=21)                                        aTGTTGCAGCCGGGAGGATGACTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGggag                                                                                                         <  1:282263/149‑1 (MQ=255)                                            tGCATCCGGGAGGATGACTCACTGTCGTACGCCCTTCGGGCCGATGCTGGCGCAACGTTATCCTTCCTGGCGCCTGAGGTTAAGACCGCTATATCTTCGCTACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCGGGGAGGAtt                                                                                                     >  1:550704/1‑149 (MQ=255)                                            tGCATCCGGGAGGATGACTCACTGACGTCCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGAtt                                                                                                     <  1:600267/149‑1 (MQ=255)                                              cATCCGGGAGGATGACTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCg                                                                                                   <  2:170591/149‑1 (MQ=255)                                                   gggAGGATGACTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCt                                                                                              >  1:312959/1‑149 (MQ=255)                                                    ggaggaTGCCTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTc                                                                                             <  2:375123/149‑1 (MQ=255)                                                         aTGACTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAGTATGGTGCATCCGGGAGGATTCGAACCTCCGAcc                                                                                        >  1:627965/1‑149 (MQ=255)                                                         aTGACTCACTGACGTTCGCCCTTCGGGCCGTTGCTAGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATCCCGCTATCTCTTCGATACCTTCATTGCTGAGGGTTACGGCGCATATGGTGCATCCGGGAGGATTCGAAGCTCCGAcc                                                                                        >  1:8574/1‑149 (MQ=18)                                                              tCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCg                                                                                   <  1:33289/149‑1 (MQ=255)                                                                 cTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGtt                                                                                <  2:213103/149‑1 (MQ=255)                                                                  gtaCGTTCGCCCTTGGGGCCGTTGTTGTCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATATCGCTATCTCTTCGATACCTCCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTc                                                                               <  2:58310/147‑1 (MQ=17)                                                                      gTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAg                                                                           >  1:365893/1‑149 (MQ=255)                                                                      gTTCGCCCATCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAGCCTCCGAACGCTCGGTTCGTAg                                                                           >  1:538541/1‑149 (MQ=255)                                                                       ttCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATGCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGc                                                                          >  1:569000/1‑149 (MQ=255)                                                                       ttCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTACCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAGGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGACCCTCCGACCGCTCGGTTCGTAGc                                                                          >  1:476647/1‑149 (MQ=255)                                                                        tCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGct                                                                         <  2:312959/149‑2 (MQ=255)                                                                          gCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGa                                                                       <  1:145033/149‑1 (MQ=255)                                                                              ttCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTAc                                                                   >  2:351378/1‑149 (MQ=255)                                                                                cgtgCCGTTGGTGGCGCCACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTTCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGACCCTCCGACCGCTCGGTTCGTAGCCGAGTActc                                                                 <  1:20575/146‑1 (MQ=17)                                                                                 ataacgttgcgccagcAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTActct                                                                >  1:525624/15‑149 (MQ=255)                                                                                       ttGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAg                                                          >  1:726119/1‑149 (MQ=255)                                                                                         gCTGGCGCAACGTTATCCTTCCTGGTGCCGGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCt                                                        <  2:260906/149‑1 (MQ=255)                                                                                            ccagcAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAg                                                     <  2:525624/146‑1 (MQ=255)                                                                                                cAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTAc                                                 <  2:500568/149‑1 (MQ=255)                                                                                                cAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCAGCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCAAc                                                 >  1:106670/1‑149 (MQ=255)                                                                                                         ccttcctGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCCTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATc                                        <  1:569087/149‑1 (MQ=255)                                                                                                           ttcctGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCgg                                      <  1:40037/149‑1 (MQ=255)                                                                                                               tGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTAct                                                                  <  2:83164/117‑1 (MQ=255)                                                                                                               tGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTAct                                                                  >  1:83164/1‑117 (MQ=255)                                                                                                                    ccggCGGGTAATACCGCTATCTCTTCGCTTCCTTCATTGCTGAAGGTTACGGAGAATATGGCGCATCCGGGAGGATTCGAACATCCGACCGCTCGGTTCGTAGCCGAGTACTCTATACAGCTGAGCTACGGATGCATCGGGAAAACTTa                             <  1:364216/146‑1 (MQ=14)                                                                                                                    ccTGCGGTTAATCCCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAAACTTa                             <  2:438057/149‑1 (MQ=255)                                                                                                                    ccTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAAc                                                                                                >  1:339396/1‑82 (MQ=255)                                                                                                                    ccTGCGGTTAATACCGCTACCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAAc                                                                                                <  2:339396/82‑1 (MQ=255)                                                                                                                     cggaggTTTATCCCGCTATATCTTAGATAACTTCATTGCTGAAGGCTACGGGGAATATGGTGCATCCGGGAGGATTCGTACCTACGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAAACTTAt                            <  1:350663/145‑1 (MQ=14)                                                                                                                         ggTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAAACTTATTCTa                        <  2:365893/149‑1 (MQ=255)                                                                                                                               tACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAAACtctttttccgccgg                  >  2:90312/1‑136 (MQ=255)                                                                                                                                  cGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAAACTTATTCTACTGCTGata               <  1:416707/149‑1 (MQ=255)                                                                                                                                              gATACCATGATAGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAAACTTAATCTACTGCGGATATTGCTACCGccc   >  2:558307/1‑147 (MQ=14)                                                                                                                                               aTACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTGTATCCAGCTGAGCTACGGATGCATCGGGAAAACTTATTCTACTGCTGATACTGATACCGctac  >  2:532525/1‑149 (MQ=255)                                                                                                                                                 |                                                                                                                                                   TAGAAATGAGATATTTTTGAAGGAAATTTTTTGGAGAAGATGGTGCATCCGGGAGGATGACTCACTGACGTTCGCCCTTCGGGCCGTTGCTGGCGCAACGTTATCCTTCCTGGTGCCTGCGGTTAATACCGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAAACTTATTCTACTGCTGATATTGATACCGCTAC  >  CP009273/2810970‑2811260

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.