New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2811114 =	51 (1.130)	5 (0.120) +TACGGAGAAT	4/276	6.0	11.6%	intergenic (‑252/+29)	yqaB/argQ	fructose‑1‑P and 6‑phosphogluconate phosphatase/tRNA‑Arg
	?	CP009273	2811556 =	31 (0.690)					intergenic (‑62/+1)	argZ/argY	tRNA‑Arg/tRNA‑Arg
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAATTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAACTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATCAAGTAAG  >  CP009273/2811411‑2811694                                                                                                                                                  |                                                                                                                                           cctccgacggTGAACCCGGG‑GGATGCCAACCCCCCACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCAGCGGGAAATTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGt                                                                                                                                        <  2:302933/141‑1 (MQ=14)  agaATACGGTGCGTCCGTGAGGATGCGAACCTCCGCCCGCCCGGTTCGTAGCCGAGTCCTCTATCCAGCTGAGCCACTGATGCATCGGGAAATTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGt                                                                                                                                        <  1:130600/149‑1 (MQ=14)         ggTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAATTTATTTTACTGCTGATCTTGATACCGCGACTAAAGCAATGTCAAGAAAGAGAGATTGCATCCg                                                                                                                                 >  2:265643/1‑149 (MQ=14)                         ttccacccTCCGACCGCTCGGTTCGGAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAATTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTc                                                                                                                 <  1:68088/143‑1 (MQ=255)                          tCGAACCCCCGACCGCTCGGTTCGGAGCCGAGTACTCCATCCACCGGAGCTACGGATGCATCGGGAAATTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTcc                                                                                                                <  1:703010/149‑1 (MQ=17)                                 tCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAATTTATTTTACTGCTGATATTGATACCGCTACGAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCt                                                                                                         >  1:610103/1‑149 (MQ=255)                                      ccGCTCGGTTCGTAGCCGAGCACTCTATCCAGCTGAGCTACGGATGCATCGGGAAATTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGtt                                                                                                    <  1:263845/149‑1 (MQ=255)                                            ggTTCGTAGCCGAGCACTCTATCCAGCTGAGCTACGGATGCAGCGGGTAATTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGc                                                                                              <  1:87796/149‑1 (MQ=255)                                               tCGTTGCCGTGTACCCTATCCAGCTGAGCTACGGATGCATCGGGAAATTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGa                                                                                           <  1:11319/149‑1 (MQ=255)                                                     ccGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAAACTTTTTCTCTGCCGATTTTTATTCCCGCACCAAAGCCATATCAAATAAGGAATGGTGGCTCCCGGGGGGTTCCAACCTCCGGCCGCCCGGGTCggcggcggagggta                                                                                     >  2:11319/1‑136 (MQ=2)                                                       gAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAATTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCCCGGGTCGTAGCGGGGGACTCTa                                                                                   >  2:161649/1‑149 (MQ=18)                                                        aGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAATTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTCCGTAGCCGCGTActcaac                                                                                  >  2:529729/1‑146 (MQ=255)                                                              ctATCCGGCTGAGCTACGGATGCATCGGGAAGTTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCt                                                                            <  1:267634/149‑1 (MQ=255)                                                                  ccAGCTGAGCTACGGATGCATCGGGAAATTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATGTCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGGGTACTCTATCCAGCTGAGc                                                                        >  2:704711/1‑149 (MQ=255)                                                                      ccgAGCTACGGATGCATCGGGAAATTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACg                                                                    <  1:618295/147‑1 (MQ=255)                                                                              cGGATGCATCGGGAAATTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGCTGCATc                                                            >  1:572514/1‑149 (MQ=255)                                                                               ggATGCATCGGGAAATTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGGGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCg                                                           >  1:5998/1‑149 (MQ=255)                                                                                        gggAACTTTTTTTTACTGCTGATATGGATCCCGTTACTAATGCCAGATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCGGTGTTCCGGATCCAGCTGAGCTACGGATGCATCGGGAAactta                                                  <  1:176889/149‑1 (MQ=18)                                                                                         ggAAATTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGTATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGCAacttac                                                 >  1:479865/1‑149 (MQ=255)                                                                                          gAAATTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAacttact                                                <  1:321796/149‑1 (MQ=255)                                                                                             atttatttTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGAGCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAACttacttta                                             >  2:441071/1‑149 (MQ=255)                                                                                                tatttTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCGCGGTTCGTAGCCGAGTACGCTATCCAGCTGAGCTACGGATGCATCGGGAAACTTACTTTACTg                                          >  2:573791/1‑149 (MQ=255)                                                                                                          ctgATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTa                                                                      >  2:95594/1‑111 (MQ=255)                                                                                                          ctgATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTa                                                                      <  1:95594/111‑1 (MQ=255)                                                                                                          ctgATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAGCTTACTTTACTGCAGAtttttt                                >  1:559065/1‑149 (MQ=255)                                                                                                          ctgATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTAGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAACTTACTTTACTGCAGAtttttg                                >  1:192844/1‑148 (MQ=255)                                                                                                                  gATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAACTTACTTTCCTGCAGATTTTTTGATACCGc                        >  1:199768/1‑149 (MQ=255)                                                                                                                   aTACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATcc                                                                                                                                  <  1:314928/42‑1 (MQ=38)                                                                                                                                 gCCATATTAAGGAAGAGATGGGGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAACTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATc         <  1:33900/149‑1 (MQ=255)                                                                                                                                     tagtaaGTAAGAGAGGGTGCAGCCGGGAGGATTCGAACCCCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAACTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATCAAGt     <  1:259298/145‑1 (MQ=255)                                                                                                                                        cAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAACTTACTTTACTGCAGATTTTTTGATACCGCCACTAAAGCCGTATCAAGTAag  >  2:116086/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                           GAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAATTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGTAAGAGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAACTTACTTTACTGCAGATTTTTTGATACCGCTACTAAAGCCGTATCAAGTAAG  >  CP009273/2811411‑2811694

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.