New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2936232 =	39 (0.870)	4 (0.090)	4/280	6.1	9.8%	intergenic (‑306/+45)	gcvA/ygdI	glycine cleavage system transcriptional activator; autorepressor/DUF903 family verified lipoprotein
	?	CP009273	2936254 =	37 (0.870)					intergenic (‑328/+23)	gcvA/ygdI	glycine cleavage system transcriptional activator; autorepressor/DUF903 family verified lipoprotein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTATACGAAATCATACCGGTATCGTTATCA  >  CP009273/2936089‑2936376                                                                                                                                                |                                                                                                                                                 tGCGTGTTCTGCTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCAcc                                                                                                                                             <  1:670831/149‑1 (MQ=255)     tgtTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTGTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATCAATGTGGCACCGCCt                                                                                                                                         >  2:447787/1‑149 (MQ=255)         cTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTATTGTGGCACCGCCTAAtt                                                                                                                                     >  1:436935/1‑149 (MQ=255)            gTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCg                                                                                                                                  >  1:304030/1‑149 (MQ=255)                aCTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGcaattaggcggtgc                                                                                                                              <  1:315765/149‑14 (MQ=255)                     gggCTTCCGGTTGTGTGGTTGTGTTGTTGTGTTTGCCATTGGTCTGCGATTCAGACCATGGTTGCAAAGCTACCTTTTTTCACCCCCTGTACATTTAGCCTGCCCGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTCCttttt                                                                                                                         <  2:186391/148‑1 (MQ=255)                      ggCTTACGGTTGTGATGTTGTGTTGTTGTGCTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCtttttt                                                                                                                        <  2:31077/149‑1 (MQ=255)                       gCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTGTGTCCATGGTGATTAATGTAGCACCGCCTAATTGCGGTGCttttttt                                                                                                                       >  1:686686/1‑149 (MQ=255)                        cTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCtttttttt                                                                                                                      >  2:636098/1‑149 (MQ=255)                         ttACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGATCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGAACATTTACCCTGTATGTCCACAATGATTAATGTAGCGCCACCTACATACGGTGCttttttttc                                                                                                                     >  2:533375/1‑148 (MQ=255)                          tACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCGGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTAc                                                                                                                    <  2:88438/149‑1 (MQ=255)                              gTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTg                                                                                                                <  2:526305/149‑1 (MQ=255)                                     tgttgtgtcgttgtgtTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATcgc                                                                                                         <  1:624120/149‑1 (MQ=255)                                           gttgttgtgttTGCAATTCGTATGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTCCCCACTCTGTCAGTAGTGATTAATGTATCACCCCCTAAGTGCGGTGCTTTTTTTTACCTTGCAATCGCGAATTa                                                                                                   >  2:578279/1‑149 (MQ=255)                                                tttgttTGCAATTCGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGAt                                                                                              <  1:665402/147‑1 (MQ=255)                                                               tCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTTATTTTCTTTACATATACCCTGGCTATCCATAATGCTTAATGTAGCACCGCCTACTTGCGGTGCTTTTTCTTACCTTGCGCTCGCGAATTACTAGTGCAGTTCGCCCAgct                                                                               >  2:684428/1‑149 (MQ=255)                                                               tCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATGGCGAATTACTGATCCAGTTCGACCctct                                                                               >  1:556542/1‑149 (MQ=255)                                                                   cGATTCAGATCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCttt                                                                           <  1:262540/149‑1 (MQ=255)                                                                        cAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGt                                                                      <  1:624249/149‑1 (MQ=255)                                                                         aGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGATCATCTCTTTCACGTc                                                                     >  2:54669/1‑149 (MQ=255)                                                                            aaaaggtagctttgCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGt                                                                  >  1:70092/14‑149 (MQ=255)                                                                              aaggtagctttgCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTTCCGTTAGttc                                                                >  2:111401/12‑147 (MQ=255)                                                                                    gCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTCCCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGa                                                          <  1:507518/149‑1 (MQ=255)                                                                                     cAAAGCTACCTTTTTTCTCTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGAt                                                         <  2:236884/149‑1 (MQ=255)                                                                                         gCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATctgc                                                     >  1:559029/1‑149 (MQ=255)                                                                                         gCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGCTGATctgc                                                     >  1:22977/1‑149 (MQ=255)                                                                                             ccTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCtgtt                                                 >  1:75075/1‑149 (MQ=255)                                                                                               ttttttCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCtgtttg                                               <  2:148668/149‑1 (MQ=255)                                                                                                tttttCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGAACATCTCTTTCACGGCAGTACGGTTGATCTGttgtttgt                                              >  2:419769/1‑149 (MQ=255)                                                                                                   ttCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGc                                           >  1:457128/1‑149 (MQ=255)                                                                                                       cTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGACTTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCAtt                                       >  2:179544/1‑149 (MQ=255)                                                                                                        ttCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTCATTGCGGTGCTTTTTTTTAACTTGCGATCGCGAATTATGGATCTAGTTGGCCAATCTCTTTCGCGTCAGAACGGTTGATGTGCTGTTTGTTCCCAtca                                      >  2:2297/1‑147 (MQ=255)                                                                                                             gTACATTTCCCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCTAATTACTGATCCAGTTCGATCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTc                                 <  2:654135/149‑1 (MQ=255)                                                                                                             gTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACTTCCGTCAGGTTGATCTCCTCATTGCTGCCCTTAGCGtg                                 >  2:148191/1‑148 (MQ=255)                                                                                                               aCATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCtt                               <  1:638812/149‑1 (MQ=255)                                                                                                                 aTTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTGATTGCGGTGCTTTTTGTTTTTTTGTTTTTGGGGTTTGTTGGTTCAGTTCGATCCTCTCTTTCACGTCTGTACGTGTGGTTTGTTGTTTGTTGCGTTTAGCCTCtttt                             >  2:432233/1‑148 (MQ=255)                                                                                                                      cccTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTATACGa                        <  2:70092/149‑1 (MQ=255)                                                                                                                      cccTGTCTGTCCATAGTGAGTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTATACGa                        <  2:570502/149‑1 (MQ=255)                                                                                                                                            aTGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCCCGTCAGTACGGTTGTTCGGCTGTTTGTTGCCATTAGCGTCTTTATACGAAATCATACCGGTATCGTTATCa  <  1:111401/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                 TGCGTGTTCTGGTGAACTTTTGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTATACGAAATCATACCGGTATCGTTATCA  >  CP009273/2936089‑2936376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.