New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	2936232 =	39 (0.870)	4 (0.090)	4/280	6.1	9.8%	intergenic (‑306/+45)	gcvA/ygdI	glycine cleavage system transcriptional activator; autorepressor/DUF903 family verified lipoprotein
	?	CP009273	2936254 =	37 (0.870)					intergenic (‑328/+23)	gcvA/ygdI	glycine cleavage system transcriptional activator; autorepressor/DUF903 family verified lipoprotein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTATACGAAATCATACCGGTATCGTTATCAGTCTGTGGTTTGCCGTCAGAGACGA  >  CP009273/2936109‑2936401                                                                                                                                                  |                                                                                                                                                    gggCTTCCGGTTGTGTGGTTGTGTTGTTGTGTTTGCCATTGGTCTGCGATTCAGACCATGGTTGCAAAGCTACCTTTTTTCACCCCCTGTACATTTAGCCTGCCCGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTCCttttt                                                                                                                                                  <  2:186391/148‑1 (MQ=255)  ggCTTACGGTTGTGATGTTGTGTTGTTGTGCTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCtttttt                                                                                                                                                 <  2:31077/149‑1 (MQ=255)   gCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTGTGTCCATGGTGATTAATGTAGCACCGCCTAATTGCGGTGCttttttt                                                                                                                                                >  1:686686/1‑149 (MQ=255)    cTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCtttttttt                                                                                                                                               >  2:636098/1‑149 (MQ=255)     ttACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGATCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGAACATTTACCCTGTATGTCCACAATGATTAATGTAGCGCCACCTACATACGGTGCttttttttc                                                                                                                                              >  2:533375/1‑148 (MQ=255)      tACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCGGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTAc                                                                                                                                             <  2:88438/149‑1 (MQ=255)          gTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTg                                                                                                                                         <  2:526305/149‑1 (MQ=255)                 tgttgtgtcgttgtgtTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATcgc                                                                                                                                  <  1:624120/149‑1 (MQ=255)                       gttgttgtgttTGCAATTCGTATGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTCCCCACTCTGTCAGTAGTGATTAATGTATCACCCCCTAAGTGCGGTGCTTTTTTTTACCTTGCAATCGCGAATTa                                                                                                                            >  2:578279/1‑149 (MQ=255)                            tttgttTGCAATTCGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGAt                                                                                                                       <  1:665402/147‑1 (MQ=255)                                           tCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTTATTTTCTTTACATATACCCTGGCTATCCATAATGCTTAATGTAGCACCGCCTACTTGCGGTGCTTTTTCTTACCTTGCGCTCGCGAATTACTAGTGCAGTTCGCCCAgct                                                                                                        >  2:684428/1‑149 (MQ=255)                                           tCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATGGCGAATTACTGATCCAGTTCGACCctct                                                                                                        >  1:556542/1‑149 (MQ=255)                                               cGATTCAGATCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCttt                                                                                                    <  1:262540/149‑1 (MQ=255)                                                    cAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGt                                                                                               <  1:624249/149‑1 (MQ=255)                                                     aGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGATCATCTCTTTCACGTc                                                                                              >  2:54669/1‑149 (MQ=255)                                                        aaaaggtagctttgCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGt                                                                                           >  1:70092/14‑149 (MQ=255)                                                          aaggtagctttgCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTTCCGTTAGttc                                                                                         >  2:111401/12‑147 (MQ=255)                                                                gCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTCCCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGa                                                                                   <  1:507518/149‑1 (MQ=255)                                                                 cAAAGCTACCTTTTTTCTCTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGAt                                                                                  <  2:236884/149‑1 (MQ=255)                                                                     gCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATctgc                                                                              >  1:559029/1‑149 (MQ=255)                                                                     gCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGCTGATctgc                                                                              >  1:22977/1‑149 (MQ=255)                                                                         ccTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCtgtt                                                                          >  1:75075/1‑149 (MQ=255)                                                                           ttttttCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCtgtttg                                                                        <  2:148668/149‑1 (MQ=255)                                                                            tttttCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGAACATCTCTTTCACGGCAGTACGGTTGATCTGttgtttgt                                                                       >  2:419769/1‑149 (MQ=255)                                                                               ttCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGc                                                                    >  1:457128/1‑149 (MQ=255)                                                                                   cTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGACTTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCAtt                                                                >  2:179544/1‑149 (MQ=255)                                                                                    ttCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTCATTGCGGTGCTTTTTTTTAACTTGCGATCGCGAATTATGGATCTAGTTGGCCAATCTCTTTCGCGTCAGAACGGTTGATGTGCTGTTTGTTCCCAtca                                                               >  2:2297/1‑147 (MQ=255)                                                                                         gTACATTTCCCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCTAATTACTGATCCAGTTCGATCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTc                                                          <  2:654135/149‑1 (MQ=255)                                                                                         gTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACTTCCGTCAGGTTGATCTCCTCATTGCTGCCCTTAGCGtg                                                          >  2:148191/1‑148 (MQ=255)                                                                                           aCATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCtt                                                        <  1:638812/149‑1 (MQ=255)                                                                                             aTTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTGATTGCGGTGCTTTTTGTTTTTTTGTTTTTGGGGTTTGTTGGTTCAGTTCGATCCTCTCTTTCACGTCTGTACGTGTGGTTTGTTGTTTGTTGCGTTTAGCCTCtttt                                                      >  2:432233/1‑148 (MQ=255)                                                                                                  cccTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTATACGa                                                 <  2:70092/149‑1 (MQ=255)                                                                                                  cccTGTCTGTCCATAGTGAGTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTATACGa                                                 <  2:570502/149‑1 (MQ=255)                                                                                                                        aTGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCCCGTCAGTACGGTTGTTCGGCTGTTTGTTGCCATTAGCGTCTTTATACGAAATCATACCGGTATCGTTATCa                           <  1:111401/149‑1 (MQ=255)                                                                                                                              cACCGCCTAATTGCGGTGCTTTTTTTTACCTTGTGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGTTTGATCTGCTGTTTGTTGCCATTAGCTTCTTTATACGAAACCATACCGGTATCGTTATCGGTCtct                     >  2:216389/1‑147 (MQ=255)                                                                                                                               aCCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTATACGAAATCATACCGGTATCGTTATCAGTCtgtg                    <  2:708266/149‑1 (MQ=255)                                                                                                                                    cTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTCCTGGTCCAGGTCGATCATCTGTTGGACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTATACGAAATCATACCGGTATCGTTATCAGTCTGTGGTTTg               <  2:304030/149‑1 (MQ=255)                                                                                                                                               gCTTTTTTGTACCTCGCGATCGCGAAGTATTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTATACGAAATCATACCGGTATCGTTATCAGTCTGTGGTTTGCCGTCAGAGAc    <  1:604636/149‑1 (MQ=255)                                                                                                                                                 ttttttttACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTATACGAAATCATACCGGTATCGTTATCAGTCTGTGGTTTGCCGTCAGAGACGa  <  2:37706/149‑1 (MQ=255)                                                                                                                                                 ttttttttACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTATACGAAATCAAACCGGTATCGTTATCAGTCTGTGGTTTGCCGTCAGAGACGa  >  2:496061/1‑149 (MQ=255)                                                                                                                                                  |                                                                                                                                                    TGGCTTACGGTTGTGATGTTGTGTTGTTGTGTTTGCAATTGGTCTGCGATTCAGACCATGGTAGCAAAGCTACCTTTTTTCACTTCCTGTACATTTACCCTGTCTGTCCATAGTGATTAATGTAGCACCGCCTAATTGCGGTGCTTTTTTTTACCTTGCGATCGCGAATTACTGATCCAGTTCGACCATCTCTTTCACGTCAGTACGGTTGATCTGCTGTTTGTTGCCATTAGCGTCTTTATACGAAATCATACCGGTATCGTTATCAGTCTGTGGTTTGCCGTCAGAGACGA  >  CP009273/2936109‑2936401

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.