| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | CP009273 | 2,420,337 | Δ120 bp | 88.2% | intergenic (‑70/+32) | hisJ ← / ← argT | histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2420336 | 2 (0.110) | 15 (0.830) | 12/270 | NT | 88.2% | intergenic (‑69/+152) | hisJ/argT | histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit |
| ? | CP009273 | 2420457 = | 2 (0.110) | intergenic (‑190/+31) | hisJ/argT | histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit | |||||
TGCGGAATCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCT > CP009273/2420191‑2420474 | tGCGGAATCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGTACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAatt < 1:24493‑M1/149‑4 (MQ=255) cagcaAACGCCGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccataatgta < 1:146302‑M1/149‑14 (MQ=255) aagcaaACGCCGCAGTTGCGCTGGAGAGGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccataatgta < 1:146281‑M1/148‑14 (MQ=255) gcgaacgcCTGAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtaca < 1:142524‑M1/146‑16 (MQ=255) ccgcAGTTGCGCTGGAGAAGGCCAGAACAAGAACCAGTTGTTGCTGCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccataatgtacagcttccc > 1:243980‑M1/1‑127 (MQ=255) tGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccataatgtacagcttcccagcgacgtatca > 1:30944‑M1/1‑115 (MQ=255) gagGCCAGAACCAGGGAGGGCGATAGCACCAGGTTGTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTGGTTACACTTAGCGTGCCATAAAAagtccatcaggtaaagcttcccagcgacgtatc < 2:85757‑M1/142‑34 (MQ=255) aaGGCCAGAACCAGAGAGTGTGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtacagcttcccagcgacgtatc < 2:172817‑M1/143‑34 (MQ=255) cAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtacagcttcccagcgacgtatcagtca > 2:225085‑M1/1‑105 (MQ=255) ccAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACTGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtccagcttcccagcgacgtatcagtcaccgtagacatt < 1:186361‑M1/149‑50 (MQ=255) agCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtacagcttcccagcgacgtatcagtcaccgtagccattaa > 2:173683‑M1/1‑92 (MQ=255) cGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccataatgtacagcttcccagcgacgtatcagtaaccgtagacattaaag > 2:94465‑M1/1‑90 (MQ=255) aTAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTaaaa < 2:1888/143‑1 (MQ=255) tCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccataatgtacagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttttccatcttgt > 2:184018‑M1/1‑65 (MQ=255) aaCTGACATTCTTTTTATAGGAAATATTTACAGTCTTGTTACACTTATCGTGCCATAAAAattccataatgtacagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtag < 2:122658‑M1/143‑84 (MQ=255) ttATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAAattccatcaggtacagcttcccagcgacgtatcagtaacagtcgacattaaagtcgaaatactttttcgccatcttgtcgtaggtgccgtcctgacgcagctc > 1:77808‑M1/1‑46 (MQ=255) ttACACTTATCGTGCCATAAAAattccatcaggtacagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgccgtcctgacgcagctcgccaagcgcctgattgaa > 2:52376‑M1/1‑22 (MQ=255) tACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACATAGCGCGCACCATGATGATCAt > 2:192437/1‑143 (MQ=255) tAAAAattccatcaggtacagcttcccagcgacgtatcagtcaccgtagacattaaagtcgaaatactttttcgccatcttgtcgtaggtgccgtcctgacgcagctcgccaagcgccttattgaaggcagccgtcagttcag > 2:291575‑M1/1‑5 (MQ=255) | TGCGGAATCGCAGCAAACGCCGCAGTTGCGCTGGAGAAGGCCAGAACCAGAGAGAGCGATAGCACCAGTTTTTTCATAATGTCCTCAACTGACAGTCTTTTTATAGGGAATATTTACAGGTTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCT > CP009273/2420191‑2420474 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |