| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | CP009273 | 2,420,337 | Δ120 bp | 88.2% | intergenic (‑70/+32) | hisJ ← / ← argT | histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2420336 | 2 (0.110) | 15 (0.830) | 12/270 | NT | 88.2% | intergenic (‑69/+152) | hisJ/argT | histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit |
| ? | CP009273 | 2420457 = | 2 (0.110) | intergenic (‑190/+31) | hisJ/argT | histidine/lysine/arginine/ornithine transporter subunit/lysine/arginine/ornithine transporter subunit | |||||
TTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCAAGCGCCTTATTGAAGGCAGCCGTCAGTTCAG > CP009273/2420311‑2420594 | tgcggaatcgcagcaaacgccgcagttgcgctggagaaggccagaaccagagagagcgatagtaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaAtt < 1:24493‑M2/3‑1 (MQ=255) tACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACATAGCGCGCACCATGATGATCAt > 2:192437/1‑143 (MQ=255) cagcaaacgccgcagttgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaattccataatgta < 1:146302‑M2/13‑7 (MQ=255) aagcaaacgccgcagttgcgctggagagggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaattccataatgta < 1:146281‑M2/13‑7 (MQ=255) gcgaacgcctgagttgcgctggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTACa < 1:142524‑M2/15‑1 (MQ=255) ccgcagttgcgctggagaaggccagaacaagaaccagttgttgctgcagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATAATGTACAGCTTccc > 1:243980‑M2/128‑149 (MQ=255) tggagaaggccagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATAATGTACAGCTTCCCAGCGACGTATCa > 1:30944‑M2/116‑149 (MQ=255) gaggccagaaccagggagggcgatagcaccaggttgttcataatgtcctcaactgacagtctttttatagggaatatttacaggttggttacacttagcgtgccataaaaAGTCCATCAGGTAAAGCTTCCCAGCGACGTATc < 2:85757‑M2/33‑1 (MQ=255) aaggccagaaccagagagtgtgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTACAGCTTCCCAGCGACGTATc < 2:172817‑M2/33‑1 (MQ=255) cagaaccagagagagcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCa > 2:225085‑M2/106‑143 (MQ=255) ccagagagagcgatagcaccagttttttcataatgtcctcaactgactgtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTCCAGCTTCCCAGCGACGTATCAGTCACCGTAGACAtt < 1:186361‑M2/49‑1 (MQ=255) cGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGa < 1:216920/149‑1 (MQ=255) agcgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGCCATTaa > 2:173683‑M2/93‑143 (MQ=255) cgatagcaccagttttttcataatgtcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATAATGTACAGCTTCCCAGCGACGTATCAGTAACCGTAGACATTAAAg > 2:94465‑M2/91‑143 (MQ=255) tcctcaactgacagtctttttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATAATGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTTTCCATCTTGt > 2:184018‑M2/66‑143 (MQ=255) aactgacattctttttataggaaatatttacagtcttgttacacttatcgtgccataaaaATTCCATAATGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAg < 2:122658‑M2/83‑1 (MQ=255) aTGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAACTACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTg > 1:126499/1‑149 (MQ=255) ttatagggaatatttacaggtttgttacacttatcgtgccataaaaATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTAACAGTCGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTc > 1:77808‑M2/47‑149 (MQ=255) ttacacttatcgtgccataaaaATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCAAGCGCCTGATTGaa > 2:52376‑M2/23‑143 (MQ=255) taaaaATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCAAGCGCCTTATTGAAGGCAGCCGTCAGTTCAg > 2:291575‑M2/6‑143 (MQ=255) | TTTGTTACACTTATCGTGCCATAAAATTGACCATCAAGGCAAAATATCCCGCCCCGTTAGACGTATTATTTTTCATTAAAAATGCTTAAGTATGCATTTCAATGCACCACGATAGTGCAACAAACCTGGCGTGCACCATGATGATCATTCCATCAGGTACAGCTTCCCAGCGACGTATCAGTCACCGTAGACATTAAAGTCGAAATACTTTTTCGCCATCTTGTCGTAGGTGCCGTCCTGACGCAGCTCGCCAAGCGCCTTATTGAAGGCAGCCGTCAGTTCAG > CP009273/2420311‑2420594 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |