New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	748589 =	48 (0.690)	7 (0.110)	5/274	9.6	13.6%	intergenic (‑338/+52)	ybgD/gltA	putative fimbrial‑like adhesin protein/citrate synthase
	?	CP009273	748613 =	44 (0.670)					intergenic (‑362/+28)	ybgD/gltA	putative fimbrial‑like adhesin protein/citrate synthase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGC  >  CP009273/748441‑748728                                                                                                                                                     |                                                                                                                                            aGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATCGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATGTAAAAATCa                                                                                                                                             >  2:359622/1‑149 (MQ=255)   ggTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAAc                                                                                                                                           >  2:654857/1‑149 (MQ=255)                    ccATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAAcggcg                                                                                                                          <  2:890329/149‑1 (MQ=255)                     cATGAAGTTTTTAATTGAAAGTATAGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAAcggcgg                                                                                                                         >  2:602386/1‑149 (MQ=255)                      atgatgTTTTTATTTGAAAGTAGTGGGTTGCTGAGAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCggg                                                                                                                        <  2:545605/149‑1 (MQ=255)                      aTGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCggg                                                                                                                        <  2:545612/149‑1 (MQ=255)                      aTGAAGTTTTTAACTGAAAGGATTGGGTTGCTGATTATTTGAGCTGTTCTATTCTTTTGAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCggg                                                                                                                        <  2:214141/149‑1 (MQ=255)                           gTTTTTAATTGATTGTTGTGGGCTGCTGATATTTTTGGCTGTTCTATTCTTTTTAAGTATCTATTTAGGTCTGGAAATGGATTTTACTTTTGCAGGTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAAcggcgg                                                                                                                         <  1:675157/143‑1 (MQ=255)                           gTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAAcggcgg                                                                                                                         <  1:1059430/143‑1 (MQ=255)                                tAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTaa                                                                                                                    <  1:136202/143‑1 (MQ=255)                                  aTTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATATCAATAAGCCCTGGAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTa                                                                                                            <  2:1158816/149‑1 (MQ=255)                                      aaaGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTTTTTTTTTTTTTATAAAAATCAACCCTTCATATGAAcggctgttttgtattat                                                                                                              >  1:554332/1‑130 (MQ=255)                                      aaaGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAAc                                                                                                        >  2:357997/1‑149 (MQ=255)                                         gTATGGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTa                                                                                                     <  2:397978/149‑1 (MQ=255)                                              gggTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTAAAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGGTAAAATATTTACAACtt                                                                                                      >  1:650543/1‑143 (MQ=255)                                               ggTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGATAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGATAAAATATTTACAACTTa                                                                                                     >  1:905475/1‑143 (MQ=255)                                                      gATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGGTTTTATTTTTACGATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGAGGGGTAAAATATTTACAACTTAGCAATCa                                                                                              >  1:906412/1‑143 (MQ=255)                                                      gATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAAtaa                                                                                              >  1:432393/1‑141 (MQ=255)                                                        tAATTTGAGCTTTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTGTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTaa                                                                                      <  2:552431/149‑1 (MQ=255)                                                             tGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGAATTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCCACCGGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCtt                                                                                 <  2:630940/149‑1 (MQ=255)                                                                      cTATTCTTTGTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCt                                                                        <  2:1179131/149‑1 (MQ=255)                                                                        aTTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCttt                                                                      <  2:735879/149‑1 (MQ=255)                                                                            tttttttttttttttataGGTCTGTTAATGGATTTTATTTTTACAATTTTTTTTGTTTAGTCATATAAAAATCAACCCGCCATTTTTACGGCTGTTTAAAATATTTACAACTTAGCATTCATCCATTAACGTTTGATATCGCt                                                                        >  1:1012022/15‑143 (MQ=255)                                                                                 aaaTATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGATTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTaa                                                                   >  1:776233/1‑143 (MQ=255)                                                                                     atCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATAGTTACAACTTAGCAATCAACCAATAACGATTGATATCGCTTTTAAAGTc                                                               >  1:688256/1‑143 (MQ=255)                                                                                       cTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTcgc                                                             <  1:1882/143‑1 (MQ=255)                                                                                        tatataGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAACGTCGCGTTTTTc                                                      >  2:596361/1‑149 (MQ=255)                                                                                        tatataGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTc                                                      <  2:779534/149‑1 (MQ=255)                                                                                        tatataGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTc                                                      <  2:854497/149‑1 (MQ=255)                                                                                         atataGGTCTGGTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGt                                                           <  1:11924/143‑1 (MQ=255)                                                                                              ggTCTGTTAATGGATTTTATTTTTACAATTTTTTTTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTc                                                      <  1:457263/143‑1 (MQ=255)                                                                                                tttGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTg                                              <  2:480167/147‑1 (MQ=255)                                                                                                      aaTGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCACGTTTTTCATATCCTTTATACa                                        >  2:396014/1‑149 (MQ=255)                                                                                                        tGGATTTTACTTTTACAACTTTTTGGGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGta                                            <  1:557314/143‑1 (MQ=255)                                                                                                           attttattttTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTCACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTCAAAGTCGCGTTTTTCATATCCTGTATACAGCTGa                                   <  2:387094/149‑1 (MQ=255)                                                                                                                  ttttACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGAc                                  >  1:1064876/1‑143 (MQ=255)                                                                                                                   tttACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAATGGCGGGGTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACg                           <  2:275795/149‑1 (MQ=255)                                                                                                                   tttACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAACTATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGAcg                                 >  1:704053/1‑143 (MQ=255)                                                                                                                        aaTTTTTTGTGTTTAGGCATATAAAGATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTGTACAGCTGACGCGAGCGGGGaa                      >  2:599361/1‑149 (MQ=255)                                                                                                                        aaTTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCaa                      >  2:394144/1‑149 (MQ=255)                                                                                                                        aaTTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCaa                      <  2:719433/149‑1 (MQ=255)                                                                                                                          ttttttGTGTTTAGGCCGATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACgg                          <  1:334116/143‑1 (MQ=255)                                                                                                                                   tttAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAAGCTTc                 >  1:552113/1‑143 (MQ=255)                                                                                                                                         cATATAAAAATCAACCCGCCATATGAACAGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGGGGCCGGGCAATCTTCATACCGTCACtg     >  2:634686/1‑149 (MQ=255)                                                                                                                                          atatAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATCCAGCTGGCGCGGACGGGCAATCTTCATACCGTCACtgt    >  2:91641/1‑149 (MQ=255)                                                                                                                                          atatAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACtgt    >  2:830739/1‑149 (MQ=255)                                                                                                                                                aaaTCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTGATATCCTGTATACAGCTGACGCGGACGGGCAATCCTCATATCGTCaacgt    >  1:195751/1‑139 (MQ=255)                                                                                                                                                  aTCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGCATACAGCTGACGCGGACGGGCAATCTTCATACCGTACCtgtga  >  1:736654/1‑142 (MQ=255)                                                                                                                                                     |                                                                                                                                            AGGGTTATAAATGCGACTACCATGAAGTTTTTAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGC  >  CP009273/748441‑748728

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.