New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	748589 =	48 (0.690)	7 (0.110)	5/274	9.6	13.6%	intergenic (‑338/+52)	ybgD/gltA	putative fimbrial‑like adhesin protein/citrate synthase
	?	CP009273	748613 =	44 (0.670)					intergenic (‑362/+28)	ybgD/gltA	putative fimbrial‑like adhesin protein/citrate synthase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGCGATCCAGCCAACGGT  >  CP009273/748472‑748760                                                                                                                                              |                                                                                                                                                    tAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTaa                                                                                                                                                    <  1:136202/143‑1 (MQ=255)   aTTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATATCAATAAGCCCTGGAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTa                                                                                                                                            <  2:1158816/149‑1 (MQ=255)       aaaGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAAc                                                                                                                                        >  2:357997/1‑149 (MQ=255)          gTATGGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTa                                                                                                                                     <  2:397978/149‑1 (MQ=255)               gggTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTAAAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGGTAAAATATTTACAACtt                                                                                                                                      >  1:650543/1‑143 (MQ=255)                ggTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGATAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGATAAAATATTTACAACTTa                                                                                                                                     >  1:905475/1‑143 (MQ=255)                       gATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGGTTTTATTTTTACGATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGAGGGGTAAAATATTTACAACTTAGCAATCa                                                                                                                              >  1:906412/1‑143 (MQ=255)                       gATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAAtaa                                                                                                                              >  1:432393/1‑141 (MQ=255)                         tAATTTGAGCTTTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTGTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTaa                                                                                                                      <  2:552431/149‑1 (MQ=255)                              tGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGAATTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCCACCGGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCtt                                                                                                                 <  2:630940/149‑1 (MQ=255)                                       cTATTCTTTGTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCt                                                                                                        <  2:1179131/149‑1 (MQ=255)                                         aTTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCttt                                                                                                      <  2:735879/149‑1 (MQ=255)                                             tttttttttttttttataGGTCTGTTAATGGATTTTATTTTTACAATTTTTTTTGTTTAGTCATATAAAAATCAACCCGCCATTTTTACGGCTGTTTAAAATATTTACAACTTAGCATTCATCCATTAACGTTTGATATCGCt                                                                                                        >  1:1012022/15‑143 (MQ=255)                                                  aaaTATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGATTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTaa                                                                                                   >  1:776233/1‑143 (MQ=255)                                                      atCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATAGTTACAACTTAGCAATCAACCAATAACGATTGATATCGCTTTTAAAGTc                                                                                               >  1:688256/1‑143 (MQ=255)                                                        cTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTcgc                                                                                             <  1:1882/143‑1 (MQ=255)                                                         tatataGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAACGTCGCGTTTTTc                                                                                      >  2:596361/1‑149 (MQ=255)                                                         tatataGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTc                                                                                      <  2:779534/149‑1 (MQ=255)                                                         tatataGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTc                                                                                      <  2:854497/149‑1 (MQ=255)                                                          atataGGTCTGGTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGt                                                                                           <  1:11924/143‑1 (MQ=255)                                                               ggTCTGTTAATGGATTTTATTTTTACAATTTTTTTTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTc                                                                                      <  1:457263/143‑1 (MQ=255)                                                                 tttGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTg                                                                              <  2:480167/147‑1 (MQ=255)                                                                       aaTGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCACGTTTTTCATATCCTTTATACa                                                                        >  2:396014/1‑149 (MQ=255)                                                                         tGGATTTTACTTTTACAACTTTTTGGGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGta                                                                            <  1:557314/143‑1 (MQ=255)                                                                            attttattttTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTCACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTCAAAGTCGCGTTTTTCATATCCTGTATACAGCTGa                                                                   <  2:387094/149‑1 (MQ=255)                                                                                   ttttACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGAc                                                                  >  1:1064876/1‑143 (MQ=255)                                                                                    tttACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAATGGCGGGGTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACg                                                           <  2:275795/149‑1 (MQ=255)                                                                                    tttACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAACTATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGAcg                                                                 >  1:704053/1‑143 (MQ=255)                                                                                         aaTTTTTTGTGTTTAGGCATATAAAGATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTGTACAGCTGACGCGAGCGGGGaa                                                      >  2:599361/1‑149 (MQ=255)                                                                                         aaTTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCaa                                                      <  2:719433/149‑1 (MQ=255)                                                                                         aaTTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCaa                                                      >  2:394144/1‑149 (MQ=255)                                                                                           ttttttGTGTTTAGGCCGATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACgg                                                          <  1:334116/143‑1 (MQ=255)                                                                                                    tttAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAAGCTTc                                                 >  1:552113/1‑143 (MQ=255)                                                                                                          cATATAAAAATCAACCCGCCATATGAACAGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGGGGCCGGGCAATCTTCATACCGTCACtg                                     >  2:634686/1‑149 (MQ=255)                                                                                                           atatAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATCCAGCTGGCGCGGACGGGCAATCTTCATACCGTCACtgt                                    >  2:91641/1‑149 (MQ=255)                                                                                                           atatAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACtgt                                    >  2:830739/1‑149 (MQ=255)                                                                                                                 aaaTCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTGATATCCTGTATACAGCTGACGCGGACGGGCAATCCTCATATCGTCaacgt                                    >  1:195751/1‑139 (MQ=255)                                                                                                                   aTCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGCATACAGCTGACGCGGACGGGCAATCTTCATACCGTACCtgtga                                  >  1:736654/1‑142 (MQ=255)                                                                                                                        cccgccgttcatatggcggGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGCATTTc                             >  1:1063734/15‑143 (MQ=255)                                                                                                                        cccgccgttcatatggcggGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGCATTTc                             >  1:770619/15‑143 (MQ=255)                                                                                                                        cccgccgttcatatggcggGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGCATTTCGATCCa                       >  2:798592/15‑149 (MQ=255)                                                                                                                            ccATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTc                         <  1:878847/143‑1 (MQ=255)                                                                                                                             cATATTAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTGACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTggg                  <  2:172274/149‑1 (MQ=255)                                                                                                                              atatGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGc                 <  2:733416/149‑1 (MQ=255)                                                                                                                               tatGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCGTACCGTCACTGTGCATTTCGCTCCAg                      >  1:467847/1‑143 (MQ=255)                                                                                                                                  gAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATGCCGTCCCTGTGCAGTTCGCTCCAGTGGGCGTTc             >  2:314257/1‑149 (MQ=255)                                                                                                                                   aaCGGCGGGTTAAAATAGTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTggg                  <  1:151461/143‑1 (MQ=255)                                                                                                                                           gTTAAAATATTTACCACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGCGATCCAGCCAACg    >  2:1171520/1‑149 (MQ=255)                                                                                                                                            ttAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGCGATCCAGc         <  1:589732/143‑1 (MQ=255)                                                                                                                                            ttAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGCGATCCAGCCCACgg   >  2:184960/1‑149 (MQ=255)                                                                                                                                             tAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGCGATCCAGCCAACGGt  >  2:756520/1‑149 (MQ=255)                                                                                                                                              aaaaTATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGCGATCCAGCCa       >  1:576238/1‑143 (MQ=255)                                                                                                                                              |                                                                                                                                                    TAATTGAAAGTATTGGGTTGCTGATAATTTGAGCTGTTCTATTCTTTTTAAATATCTATATAGGTCTGTTAATGGATTTTATTTTTACAATTTTTTGTGTTTAGGCATATAAAAATCAACCCGCCATATGAACGGCGGGTTAAAATATTTACAACTTAGCAATCAACCATTAACGCTTGATATCGCTTTTAAAGTCGCGTTTTTCATATCCTGTATACAGCTGACGCGGACGGGCAATCTTCATACCGTCACTGTGCATTTCGCTCCAGTGGGCGATCCAGCCAACGGT  >  CP009273/748472‑748760

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.