mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0b
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 25 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 1203261 | 23 (0.490) | 9 (0.210) | 9/264 | 3.2 | 31.3% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | = 1205058 | 19 (0.450) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 1203246 = | 24 (0.510) | 5 (0.120) | 5/264 | 4.6 | 19.5% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | CP009273 | 1205075 = | 20 (0.480) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | CP009273 | 2722802 = | 33 (0.700) | 6 (0.140) | 5/276 | 4.8 | 17.2% | noncoding (2/76 nt) | gltW | tRNA‑Glu |
| ? | CP009273 | = 4158259 | 27 (0.610) | intergenic (+131/‑41) | rrsB/gltT | 16S ribosomal RNA of rrnB operon/tRNA‑Glu | |||||
| * | ? | CP009273 | = 4161535 | 33 (0.700) | 7 (0.150) | 5/284 | 4.9 | 18.1% | intergenic (+63/‑30) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon |
| ? | CP009273 | = 4202950 | NA (NA) | intergenic (+76/‑18) | rrlE/rrfE | 23S ribosomal RNA of rrnE operon/5S ribosomal RNA of rrnE operon | |||||
| * | ? | CP009273 | = 3940048 | 69 (1.460) | 7 (0.150) | 5/284 | 4.9 | 9.6% | intergenic (+81/‑12) | rrlC/rrfC | 23S ribosomal RNA of rrnC operon/5S ribosomal RNA of rrnC operon |
| ? | CP009273 | = 4161529 | NA (NA) | intergenic (+57/‑36) | rrlB/rrfB | 23S ribosomal RNA of rrnB operon/5S ribosomal RNA of rrnB operon | |||||
| * | ? | CP009273 | 2719559 = | NA (NA) | 7 (0.150) | 5/284 | 4.9 | NA | intergenic (‑12/+81) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon |
| ? | CP009273 | 2719583 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 225231 | 38 (0.810) | 7 (0.150) | 5/284 | 4.9 | 16.1% | intergenic (+82/‑12) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | CP009273 | 2719583 = | NA (NA) | intergenic (‑36/+57) | rrfG/rrlG | 5S ribosomal RNA of rrnG operon/23S ribosomal RNA of rrnG operon | |||||
| * | ? | CP009273 | = 3527855 | 49 (1.040) | 4 (0.090) | 4/274 | 5.2 | 8.1% | intergenic (+56/+20) | pck/envZ | phosphoenolpyruvate carboxykinase/sensory histidine kinase in two‑component regulatory system with OmpR |
| ? | CP009273 | = 3527861 | 46 (1.050) | intergenic (+62/+14) | pck/envZ | phosphoenolpyruvate carboxykinase/sensory histidine kinase in two‑component regulatory system with OmpR | |||||
| * | ? | CP009273 | 4590670 = | 66 (1.400) | 4 (0.090) | 4/284 | 5.3 | 6.0% | coding (123/738 nt) | dnaC | DNA biosynthesis protein |
| ? | CP009273 | 4590685 = | 61 (1.350) | coding (108/738 nt) | dnaC | DNA biosynthesis protein | |||||
| * | ? | CP009273 | = 1723990 | 26 (0.550) | 4 (0.090) | 4/282 | 5.3 | 13.2% | coding (647/4617 nt) | lhr | putative ATP‑dependent helicase |
| ? | CP009273 | = 1724009 | 28 (0.620) | coding (666/4617 nt) | lhr | putative ATP‑dependent helicase | |||||