| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2269346 | 11 (0.570) | 15 (0.780) | 14/276 | NT | 57.7% | coding (595/1026 nt) | yejE | microcin C transporter YejABEF, permease subunit; ABC family |
| ? | CP009273 | 3576788 = | NA (NA) | intergenic (+10/‑55) | yrhA/insA | pseudogene, interrupted by IS1E/IS1 repressor TnpA | |||||
TGACTCTCTGTTCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACTACATTCGTGCGGCACAGGCGCTTGGCGTCAGCGATCG > CP009273/2269200‑2269488 | tGACTCTCTGTTCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGCCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTa < 2:287920/149‑1 (MQ=255) ataacctgaatctgaggcagcatctggtacggctgggacggcagtcgctgtcgttctcaaaatcggtggagctgcatgacgaagtcatcgggcattatctgaacgtaaaacactctcaataagttggaatcattaccCCAGCGCCGTAc < 2:17345‑M1/12‑1 (MQ=255) tctcgGTTCCCGCGGGGTGGCCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgat < 2:123769‑M1/149‑7 (MQ=255) tctGTTCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCt < 1:191007/149‑1 (MQ=255) tgaggcagcacctggcacggctgggacggaagtcgcggtcgttctcaaaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCt > 1:209208‑M1/126‑149 (MQ=255) gcacctggcacggctgggacggaagtcgctgtcgttctcaaaaacggtggagctgcaggacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCCAACGTCGCACAGCCTACCTTCTGGGGgct < 2:331100‑M1/31‑1 (MQ=255) gggCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGgctgc > 2:289751/1‑149 (MQ=255) ggCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgtcaacttactctttt > 2:71701‑M1/1‑124 (MQ=255) gCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgattta < 1:174321‑M1/149‑27 (MQ=255) ggcacggctgggacggaagtcgctgtcgttctcaaaaccggtggagctgcttgacaatgtcatcgggcattatctgaacataaaacactatcaataagttggagtccttaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGc > 2:216839‑M1/113‑149 (MQ=255) gggCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTc < 1:206680/149‑1 (MQ=255) cTACAAGGGTTTTTCGGCGGTAAAGTCGATCTTTGGGGACAACGCTTTCTTTAAGTATGGTCGGGGGTGCCGACTCTGTTTTTGATTATTTTACCTTCCAGCGGCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGtt < 2:111852/149‑1 (MQ=255) cccaaggtcagtACGGCGGTAAATGCGATCTCTGGGGACAACGCTTTATTGTTGTACCTGCTTGTATGCCGTCGCTGTTTTTGATTATTTTACTTTCCAGCGCCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGttt < 1:73248/138‑1 (MQ=255) cTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGa < 1:233938/149‑1 (MQ=255) ggTAAAGTCGATCTCTAGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggct > 2:105756‑M1/1‑88 (MQ=255) ggTAAAATCGCTCTATGGGGACAACGCATGATTGAAGTGTGGTCGGGGATGGCGACGCTGTTGTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggct > 2:105660‑M1/1‑88 (MQ=255) gTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGATCAGGAATGCCGACGCTGTTTAAGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggctt > 1:38037‑M1/1‑87 (MQ=255) aaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGgta < 2:331629‑M1/71‑2 (MQ=255) aaatcggtggagctgcatgacaaagtcatcgggcattatctgaacataaaacactatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTc < 2:331596‑M1/71‑1 (MQ=255) ctccGGCGACTACCCTTTATTGCATTATGGTCTGGGATGCCGACGCTGTTTTTGATTATTTTACTTCCCAGCGTCGggtgatgctgcccacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatc < 2:11389‑M1/149‑74 (MQ=255) ctGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcag < 1:339000‑M1/149‑76 (MQ=255) gAAGTATGGTCGGGGATGCCGACGCTGTTTTTCATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttaatgatttagtgtacgatggtgtttttgaggtcctccggtggcttgtgcttctatcagctgtccctcctgttcagct > 2:89682‑M1/1‑55 (MQ=255) aaGTATGGTCGGGGATGCCGACGCTGTTTTTGCTTATTTTACTTTCCAGCGTCGgataaaactgccaacttacagatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttccgctc > 1:27221‑M1/1‑54 (MQ=255) aGTATGGTCGGGGATGCCGACGCTGTTTGTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctac < 1:140250‑M1/149‑97 (MQ=255) gTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtggtccagtggcttctgtttctagcagctgtccctcctgttcagctactgacgg > 2:304817‑M1/1‑47 (MQ=255) tCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCTGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggg < 1:180794‑M1/149‑104 (MQ=255) aacataaaacactatcaataaggtggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGAc > 1:331100‑M1/37‑149 (MQ=255) acactatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGATGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACTACATTCg < 1:154740‑M1/121‑1 (MQ=255) ctatcaataagttggagtcattaccCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACTACATGcgttc < 1:221109‑M1/124‑3 (MQ=255) tttGATTATTTTACTTTCCCGCGGCGggtgttgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagcggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaag < 2:282476‑M1/149‑124 (MQ=255) tGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACTACATTCGTGCGGCACAGgcg > 2:132395/1‑149 (MQ=255) ttttACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACTACATTCGTGCGGCACAGGCGGTTTGc > 2:338503/1‑149 (MQ=255) ttACTTTCCTGCGTCGggtgatgctgccaacttactgatttagtgtatgatggtgtttttgaggtgctccagtggcttctgtttctatcagctgtccctcctgttcagctactgacggggtggtgcgtaacggcaaaagcaccgccgga < 1:71701‑M1/149‑134 (MQ=255) ccAGCGTCGTACAGCCTAACTTCGGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTTGTAATTTCGACTACATTCGTGCGGCACAGGCGCTTGGCGTCAGCGAt < 1:289751/149‑1 (MQ=255) aGCGTTGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACTACATTCGTGCGGCACAGGCGCTTGGCGTCAGCGATCg < 1:320287/149‑1 (MQ=255) aGCCTCGTACAGCCTAACTTCTGGTGGCTGCTGGTAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACTACATTCGTGCGGCACAGGCGCTTGGCGTCAGCGATCg < 2:252707/149‑1 (MQ=255) | TGACTCTCTGTTCCAGCGTGATGGGCGTGCTGGCGGGGGCGCTACAAGGCTATTACGGCGGTAAAGTCGATCTCTGGGGACAACGCTTTATTGAAGTATGGTCGGGGATGCCGACGCTGTTTTTGATTATTTTACTTTCCAGCGTCGTACAGCCTAACTTCTGGTGGCTGCTGGCAATTACTGTCTTGTTTGGCTGGATGAGTCTGGTCGGCGTGGTGCGGGCGGAGTTTTTACGTACTCGTAATTTCGACTACATTCGTGCGGCACAGGCGCTTGGCGTCAGCGATCG > CP009273/2269200‑2269488 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |