New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2269346	11 (0.570)	15 (0.780)	14/276	NT	57.7%	coding (595/1026 nt)	yejE	microcin C transporter YejABEF, permease subunit; ABC family
	?	CP009273	3576788 =	NA (NA)					intergenic (+10/‑55)	yrhA/insA	pseudogene, interrupted by IS1E/IS1 repressor TnpA

CTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTA‑TGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAG  >  CP009273/3576646‑3576926                                                                                                                                               |                                                                                                                                            ctcGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGAtg                                                                                                                                       <  1:275291/149‑1 (MQ=255)               cTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGCTAGTGATCGGGGATTATAGCATTTCAATATTTACTTACGACATTAAAGGAGATGCTGCCAACTTACTg                                                                                                                         >  2:103968/1‑149 (MQ=255)               cTTCAGTTAAAAACCTTTTTGCCGTAAAAGAATTTTATAGAAATAATGATGATTTCATAAACCATGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTg                                                                                                                         >  1:171646/1‑149 (MQ=255)                        aaaaCCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATGTCATAAACCCTGATCTACCAGAACTGTTAGTTGTCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAgtgt                                                                                                                <  2:285555/149‑1 (MQ=255)                            ccTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTa‑tga                                                                                                           <  1:215609/149‑1 (MQ=255)                               ttttGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGAAATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTa‑tgatag                                                                                                        >  2:72103/1‑147 (MQ=255)                                        aaaTGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTA‑TGATGGTGTTTTTGa                                                                                               <  2:248652/149‑1 (MQ=255)                                         aaTGAATTTTATAGAAATAATTATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTA‑TGATGGTGTTTTTGAg                                                                                              <  2:170675/149‑1 (MQ=255)                                               ttttATAGAAATAATGATGATTTCATAAACCCTGATCCACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTA‑TGATGGTGTTTTTGATGTGGTc                                                                                        >  1:131652/1‑149 (MQ=255)                                                                       aTAAACCCTGATCTACAAGAACGGTTCGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTA‑TGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCt                                                                >  1:27562/1‑149 (MQ=255)                                                                                       aaGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTA‑TGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGc                                                <  1:2108/149‑1 (MQ=255)                                                                                                 aGTGATCGGGGATTATATCATTTCAATATTTACTTATGACATTAAAGATGATGCTGCCAACTTACTGATTTAGTGTA‑TGATGGTGTTTTTGAGGTGCTCCAGTGGCTTGTGCTTTTCGTATCGGGCCCTCCTGATCAGCTACTGACggg                                      <  1:244966/149‑1 (MQ=18)                                                                                                        cgggATTATAGCATTTCAATATGTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTA‑TGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGc                               <  2:92370/148‑1 (MQ=255)                                                                                                                              ttACTTATGACATTAAAGGTGATGCTGCCAACTGACAG‑CTTAGAAAATTAATACTTTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTTTCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCgg         <  1:72103/149‑1 (MQ=14)                                                                                                                                  ttATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTA‑TGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACAt     <  1:234534/149‑1 (MQ=39)                                                                                                                                     tGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTA‑TGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAg  >  1:209083/1‑149 (MQ=37)                                                                                                                                               |                                                                                                                                            CTCGATTCCAGAACCTTCAGTTAAAAACCTTTTTGCCGTAAATGAATTTTATAGAAATAATGATGATTTCATAAACCCTGATCTACAAGAACGGTTAGTGATCGGGGATTATAGCATTTCAATATTTACTTATGACATTAAAGGTGATGCTGCCAACTTACTGATTTAGTGTA‑TGATGGTGTTTTTGAGGTGCTCCAGTGGCTTCTGTTTCTATCAGCTGTCCCTCCTGTTCAGCTACTGACGGGGTGGTGCGTAACGGCAAAAGCACCGCCGGACATCAG  >  CP009273/3576646‑3576926

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.