| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | CP009273 | 2,400,257 | IS5 (+) +4 bp | 41.5% | intergenic (‑137/‑780) | lrhA ← / → alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2282398 = | NA (NA) | 10 (0.520) | 10/276 | NT | 44.7% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 2400257 = | 12 (0.640) | intergenic (‑137/‑783) | lrhA/alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 | |||||
| * | ? | CP009273 | = 2283592 | NA (NA) | 7 (0.360) | 7/276 | NT | 36.2% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 2400260 | 12 (0.640) | intergenic (‑140/‑780) | lrhA/alaA | transcriptional repressor of flagellar, motility and chemotaxis genes/valine‑pyruvate aminotransferase 2 | |||||
CAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCC > CP009273/2282250‑2282536 | cAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGAATTATTGGCGGTCCCATAAACCAGCTGGATATCGTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATCTaag > 1:280853/1‑149 (MQ=255) aaTTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCACATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATaagga > 1:112972/1‑149 (MQ=255) aaTTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCACATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATaagga > 1:268058/1‑149 (MQ=255) ttttATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTg > 1:182855/1‑149 (MQ=255) tGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGAACAACACCATCAACTGTCTCCCCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCTAGTAAGCg > 1:66368/1‑149 (MQ=255) cGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAAt > 2:241819/1‑149 (MQ=255) tattatTGGCGGTCCCATAAACCCGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTAAACAGTTGATGCCAATGCTATGGGTGAATGTAGGGAAGGGGCGGATAAGCGGGGAAATTCTTCTCGGCTGACTCAg > 1:256508/1‑149 (MQ=38) cAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTg < 1:266422/149‑1 (MQ=255) gCTGGATATCTTTTTCCAGGACAACACCATCAAGTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAg > 1:208245/1‑149 (MQ=255) tCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGGTTGAGCCGAtttt > 2:167109/1‑149 (MQ=255) cTTTTTCCAGGACAACACCATCAACCGTATCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGATATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGAttttt > 1:181099/1‑149 (MQ=255) tttttCCAGGACAACACCATCAACTGTCTCACCTTACTCAACAGTTGATGCCAATGCTATGGGGGAAAATAAGGAAGGTGCGAATCAGCGGGGAAATTGTTCTCGGCTGGCTCAGTCATTGCATTTCTTCCTGTTTGAGCCGAtttttt > 1:119805/1‑149 (MQ=255) gACAACACCATCAACTGTCTCACCGTCCTCAACAGTTGATGACAATGATATGAGTGAATATAAGGAAAGTGCGAATAAGCGGGGAAATTCTTCTCGACTGACTGAGTCATTGCATTACTTCATGTTTGAGCCGATTTTTTATCCCTTaa > 1:21843/1‑149 (MQ=18) tGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGc > 2:193831/1‑149 (MQ=255) tctcACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGATGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATTCCTTGAATCAGCCt > 1:266643/1‑149 (MQ=255) cAAGGCGATGGTTAATTATAAGGAAGTTTCGAATAAGCCGGTAACTTCTTCTCGGCTGACGCAGTCATTTCCTTTCTTCATCTTTTCTCCGTTTTTGTCTCCCGTCAATGCCTTGAATCAGCCTACTTAGTCCGTTTCTTCGCCATTTa < 2:66368/149‑1 (MQ=2) aaTGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTTAGCCGATTTTTTCTCCCGTAAATGTCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTaa < 1:307294/149‑1 (MQ=255) aaTGCTATGGGTGAATATAAGGAAGGTGCCAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCGTCGCCATTTaa > 2:181967/1‑149 (MQ=255) tGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGTGGAAATTCTTCTCGGCTGACTCAGTCATTTCTTTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAgg < 2:12009/149‑1 (MQ=255) gTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATcc > 1:173824/1‑149 (MQ=35) | CAAATTCTTTTATATGCTGTTCTCCGCCAGGATTGATTTTCGTATTATTGGCGGTCCCATAAACCAGCTGGATATCTTTTTCCAGGACAACACCATCAACTGTCTCACCATACTCAACAGTTGATGCCAATGCTATGGGTGAATATAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCC > CP009273/2282250‑2282536 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |