New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2096424	NA (NA)	29 (1.250)	24/268	NT	74.4%	noncoding (1/1195 nt)	IS5	repeat region
	?	CP009273	= 2427745	10 (0.430)					coding (476/660 nt)	dedA	DedA family inner membrane protein

AAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2096286‑2096424 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAGGATAACCTTAAGCTGCTGATCGTCGGGATTATTGTGGTTTCTATTTTGCCGGGCGTCATCG  <  CP009273/2427745‑2427605                                                                                                                                                                                                                                                                                          aagATCTCTTTGCTGGGCTGGCGGCGCTTACTTCTGAATTTACGTTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATTTCATATCAGGGACTTGTTCGCACCTTCCATAACG                                                                                                                                         <  1:118126/142‑1  AAATCCCTTTTCTGGTCTGACTGCGCTAACTGCTGAATTCACTGCCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCCCCAGATGACAAACATGATCTCATACCAGGGACTTGTTCGCACCTTCCATAACGT                                                                                                                                        <  2:256924/145‑1                   TGACGGCGCTTACTGCTGAATTCACTGTCGGCCAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTCCCATAACGTGATCGGCGCACTGTTGT                                                                                                                       <  2:358718/145‑1                         CGCTTCCTGCTGAATTCACTGTCGGCGAATGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGAGCTGCGCACTGTTGTGGGTAC                                                                                                                 <  2:85897/145‑1                               CTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATTCGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTT                                                                                                           <  1:131775/145‑1                                 GCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTTATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGCTCGGCGCACTGTTGTGGGTACTGCTTTTT                                                                                                         <  1:130993/145‑1                                   TGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTAC                                                                                                       <  2:3493/145‑1                                       TTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTAC                                                                                                   >  2:374224/1‑145                                               CGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTA                                                                                           <  1:4807/145‑1                                                 GCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATT                                                                                         >  2:363258/1‑145                                                   GAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTC                                                                                       >  1:34003/1‑145                                                               ATGACTCATGATGACCCCTGTTCTATGGCTCCAGATGACAAACATGACCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATC                                                                           <  1:117154/145‑1                                                                         ATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCGATTTCTTCGGTACAATCCCGATGGTTC                                                                 >  2:327357/1‑145                                                                              CCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAGGtt                                                            >  2:171674/1‑143                                                                               ccaGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAGGATA                                                           <  2:365516/142‑1                                                                               CCTGTTCTATGGCTCCAGATGACAATCATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAGGATA                                                           <  1:124449/145‑1                                                                               CCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCGACGCAGGCTATTTCTTCGGTACAATCCCCATGGTTCAGGATA                                                           >  1:5574/1‑145                                                                                CTGTTCTATGGCTCCAGATGACAAACATGTTCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAGGATAA                                                          <  1:376388/145‑1                                                                                   TTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCAATTTCTTCGGTACAATCCCGATGGTTCAGGATAACCT                                                       >  1:423734/1‑145                                                                                            TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAGGATAACCTTAAGCTGCT                                              >  2:351104/1‑145                                                                                            TCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAGGATAACCTTAAGCTGCT                                              >  1:145950/1‑145                                                                                                    ACAAACTTGATTTCATATCAGGGATTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAGGATAACCTTAAGCTGCTGATCGTCG                                      <  2:21008/145‑1                                                                                                     CAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAGGATAACCTTAAGCTGCTGATCGTCGG                                     >  2:191731/1‑145                                                                                                      AAACATGATCTCATATCAGGGGCTTGTTAGCACCTTCCATAACGTGATGGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACGATGCCGATGGTTCAGGATAACCTTCAGGTGCGGAGGGTCGGG                                    >  1:76754/1‑145                                                                                                       AACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTAGGAACTACTTTTTACCTACGCAGGCTATTTATTCGGTACAATCCCGATGGTTCAGGATAACCTTAAGCTGCTGAACGTCGGGA                                   >  2:498/1‑145                                                                                                                            CTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAGGATAACCTTAAGCTGCTGATCGTCGGGATTATTGTGGTTTCTATTTTGC              <  1:374224/145‑1                                                                                                                                  CGCATCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAGGATAACCTTAAGCTGCTGATCGTCGGGATTATTGTGGTTTCTATTTTGCCGGGCG        <  2:147819/145‑1                                                                                                                                  CGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAGGATAACCTTAAGCTGCTGATCGTCGGGATTATTGTGGTTTCTATTTTGCCGGGCG        <  1:136117/145‑1                                                                                                                                  CGCACCTTCCATAACGTGAACGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCTGGATAACGTTAAGCTGCTGATCGTCGGGATTATTGTGGTTTCTATTTTGCCGGGCG        <  1:265988/145‑1                                                                                                                                       CTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAGGATAACCTTAAGCTGCTGATCGTCGGGATTATTGTGGTTTCTATTTTGCCGGGCGTCATC   >  2:80770/1‑145                                                                                                                                        TTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAGGATAACCTTAAGCTGCTGATCGTCGGGATTATTGTGGTTTCTATTTTGCCGGGCGTCATCG  <  2:241819/145‑1                                                                                                                                                                                                                                                                                          AAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/2096286‑2096424 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAGGATAACCTTAAGCTGCTGATCGTCGGGATTATTGTGGTTTCTATTTTGCCGGGCGTCATCG  <  CP009273/2427745‑2427605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.