| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2096424 | NA (NA) | 29 (1.250) | 24/268 | NT | 74.4% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 2427745 | 10 (0.430) | coding (476/660 nt) | dedA | DedA family inner membrane protein | |||||
CGATGACGCCCGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATGGGTTTTGTCGAGATA > CP009273/2427605‑2427884 | cGATGACGCCCGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaa < 2:241819‑M2/145‑5 (MQ=255) gATGACGCCCGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTCAAAAACAGTACCCACAACAGTGCGCCGATCACGTTATAAgcg > 2:91726/1‑145 (MQ=255) gATGACGCCCGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaag > 2:80770‑M2/1‑140 (MQ=255) gtGACGCACGGCAAAATAGACTCCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAgcgg < 1:372762/144‑1 (MQ=255) cGCCCGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcg < 1:136117‑M2/145‑11 (MQ=255) cGCCCGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaagatgcg < 2:147819‑M2/145‑11 (MQ=255) cGCCCGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAACGTTATCCAGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGTTCACGTTATggaaggtgcg < 1:265988‑M2/145‑11 (MQ=255) gCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaag < 1:374224‑M2/145‑17 (MQ=255) acaATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGc > 1:145092/1‑145 (MQ=255) caATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGCCATGTGGcg > 1:176251/1‑144 (MQ=255) tCCCGACGTTCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAATAAATAGCCTGCGTAGGTAAAAAGTAGTTCCTACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtt > 2:498‑M2/1‑108 (MQ=255) cccGACCCTCCGCACCTGAAGGTTATCCTGAACCATCGGCATCGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCCATCACGTTATggaaggtgctaacaagcccctgatatgagatcatgttt > 1:76754‑M2/1‑107 (MQ=255) ccGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttg > 2:191731‑M2/1‑106 (MQ=255) cgacgaTCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaaatccctgatatgaaatcaagtttgt < 2:21008‑M2/145‑41 (MQ=255) agcagcTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga > 2:351104‑M2/1‑97 (MQ=255) agcagcTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctgga > 1:145950‑M2/1‑97 (MQ=255) cagcTTAAGGTTAGCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCTTTCCCGCAACAAACggg < 1:155587/145‑1 (MQ=255) aGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATTGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaa > 1:423734‑M2/1‑88 (MQ=255) ttATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagaacatgtttgtcatctggagccatagaacag < 1:376388‑M2/145‑61 (MQ=255) tATCCTGAACCATGGGGATTGTACCGAAGAAATAGCCTGCGTCGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagg > 1:5574‑M2/1‑84 (MQ=255) tATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaactgg < 2:365516‑M2/145‑62 (MQ=255) tATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgattgtcatctggagccatagaacagg < 1:124449‑M2/145‑62 (MQ=255) aacctgAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacaggg > 2:171674‑M2/3‑83 (MQ=255) cTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACg > 1:123150/1‑145 (MQ=255) gAACCATCGGGATTGTACCGAAGAAATCGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcat > 2:327357‑M2/1‑78 (MQ=255) aaCCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATc < 2:412311/145‑1 (MQ=255) gATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgaggtcatgtttgtcatctggagccatagaacaggggtcatcatgagtcat < 1:117154‑M2/145‑78 (MQ=255) gaaATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttc > 1:34003‑M2/1‑56 (MQ=255) aaTAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgc > 2:363258‑M2/1‑54 (MQ=255) tAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccg < 1:4807‑M2/145‑94 (MQ=255) gTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaa > 2:374224‑M2/1‑44 (MQ=255) gtatacaGCAGAACCCACAACAGCGCCGCGATCACGTTATAAGCGGCGAAATGACGGTACGACATCTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCCTACGATCGGCATAAAACGGGCGTGAATAATCGTTTTGCCGCCAt < 1:319257/139‑1 (MQ=255) gTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattca < 2:3493‑M2/145‑106 (MQ=255) aaaaaGCAGTACCCACAACAGTGCGCCGAGCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcataagtcatcaacttaccttcgccgacagtgaattcagc < 1:130993‑M2/145‑108 (MQ=255) aaaGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtcccgaatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcag < 1:131775‑M2/145‑110 (MQ=255) gTACCCACAACAGTGCGCAGCTCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttacattcgccgacagtgaattcagcaggaagcg < 2:85897‑M2/145‑116 (MQ=255) tACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGCACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATaa < 2:145092/145‑1 (MQ=255) acaacaGTGCGCCGATCACGTTATgggaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttggccgacagtgaattcagcagtaagcgccgtca < 2:358718‑M2/145‑122 (MQ=255) acaGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCACGATTCTCATAAAACTGATg > 1:98564/1‑145 (MQ=255) cGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAATTGCTGGGATTTGtt > 2:293546/1‑144 (MQ=255) aCGTTATggaaggtgcgaacaagtccctggtatgagatcatgtttgtcatctggggccatagaacagggttcatcatgagtcatcaacttaccttcgccggcagtgaattcagcagttagcgcagtcagaccagaaaagggattt < 2:256924‑M2/145‑139 (MQ=255) cGTTATggaaggtgcgaacaagtccctgatatgaaatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgaacgtaaattcagaagtaagcgccgccagcccagcaaagagatctt < 1:118126‑M2/145‑140 (MQ=255) | CGATGACGCCCGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATGGGTTTTGTCGAGATA > CP009273/2427605‑2427884 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |