| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | CP009273 | 2,215,619 | IS2 (+) +5 bp | 33.3% | intergenic (‑151/‑41) | bglX ← / → dld | beta‑D‑glucoside glucohydrolase, periplasmic/D‑lactate dehydrogenase, FAD‑binding, NADH independent |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2062422 = | NA (NA) | 6 (0.260) | 6/268 | NT | 39.1% | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | CP009273 | 2215619 = | 9 (0.400) | intergenic (‑151/‑45) | bglX/dld | beta‑D‑glucoside glucohydrolase, periplasmic/D‑lactate dehydrogenase, FAD‑binding, NADH independent | |||||
| * | ? | CP009273 | = 2063752 | NA (NA) | 3 (0.130) | 3/268 | NT | 24.3% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | CP009273 | = 2215623 | 9 (0.400) | intergenic (‑155/‑41) | bglX/dld | beta‑D‑glucoside glucohydrolase, periplasmic/D‑lactate dehydrogenase, FAD‑binding, NADH independent | |||||
GTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATT > CP009273/2063618‑2063893 | gtgGTACGGCGTCTGCGTTTCTCCGGCCCTAAGGCATCAATCACCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGc < 2:414666/145‑1 (MQ=255) tACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCAtcc > 1:219737/1‑145 (MQ=39) aCGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCAtcct < 1:186831/145‑1 (MQ=40) aCGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTCGCGAAGCAtcct > 1:284046/1‑145 (MQ=38) tCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGGCTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGAGACAGTCTTGTGGCGCAGCCTCGACCCgtg > 1:243075/1‑145 (MQ=11) cGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTATGGGCGAAGCATCCTCCCGTGtttt > 1:286980/1‑145 (MQ=255) cGTTTCTCCGGCCCTAAGACATCAAGCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGtttt < 2:368073/145‑1 (MQ=255) ctcCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATtc > 1:380079/1‑145 (MQ=255) tcaattaTCTGTTCTCCAATGACTAGTCCGACTATTAGTATTAAGACTATCCCTTATTTAAGTGATATTGGTTTTCTGGAGATTCACGGGGCCAGTCTAGTGTCGACGCATCCTCCCTGGTTTTAATTCTCCTTGGTGGCCagga > 1:197030/1‑145 (MQ=17) tctcCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCa < 1:62074/145‑1 (MQ=255) caatcagcaGTCTAAAAACTAGAATTAAGACTATCACTTATTTAAGCGATATTGGTTGTCTGGAGATTCAGGAAGCCAGACTAGTGACGAAGCAGCCTCACGAGTCTTAATTATCATAGATGGTCAGGAGATAACTTATCAgcgc > 1:368411/9‑145 (MQ=18) tCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATa > 1:355732/1‑145 (MQ=255) tAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATCCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAAt < 2:60877/145‑1 (MQ=255) tATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGAGGGCCAGTCTAGTGGCGAAGCAGCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAAATTATCAGCGCGCCGGAGATAAATaagagatgg > 2:362070/1‑137 (MQ=25) tATCACTTAGTTAATGGATATTGGTTCTGTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCTTCCTCCCTTGTTTTAATTCTCAGTGATGGTCAGGAGGTTACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGa < 1:203637/145‑1 (MQ=38) tCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATa < 1:383716/145‑1 (MQ=255) ttATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGGTAATTATGGTGTGGGACTGTTGATAGATg > 2:192709/1‑145 (MQ=255) aTTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAg > 1:302210/1‑145 (MQ=255) ttGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGCTAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAg > 1:31604/1‑145 (MQ=255) tGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCGTTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAg < 2:219737/145‑1 (MQ=255) aGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGaaa > 1:391774/1‑145 (MQ=255) gggCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGt > 2:174970/1‑145 (MQ=255) tCTAGTGGCGAAGCATCCTCCCGAGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGGCCATAtt > 2:234786/1‑145 (MQ=255) | GTGGTACGCCGTCTGCGTTTCTCCGGCCCTAAGACATCAATCATCTGTTCTCCAATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGTGGCGAAGCATCCTCCCGTGTTTTAATTCTCATTGATGGTCAGGAGGTAACTTATCAGCGCGCCGGAGATAATTATGGTGTGGGACTGTTGATAGATGAGTCTGCGCTGGAGCGTGTTGAGGTAGTGAAAGGTCCATATT > CP009273/2063618‑2063893 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |