| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC JC | CP009273 | 2,215,619 | IS2 (+) +5 bp | 33.3% | intergenic (‑151/‑41) | bglX ← / → dld | beta‑D‑glucoside glucohydrolase, periplasmic/D‑lactate dehydrogenase, FAD‑binding, NADH independent |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 2062422 = | NA (NA) | 6 (0.260) | 6/268 | NT | 39.1% | noncoding (1331/1331 nt) | IS2 | repeat region |
| ? | CP009273 | 2215619 = | 9 (0.400) | intergenic (‑151/‑45) | bglX/dld | beta‑D‑glucoside glucohydrolase, periplasmic/D‑lactate dehydrogenase, FAD‑binding, NADH independent | |||||
| * | ? | CP009273 | = 2063752 | NA (NA) | 3 (0.130) | 3/268 | NT | 24.3% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | CP009273 | = 2215623 | 9 (0.400) | intergenic (‑155/‑41) | bglX/dld | beta‑D‑glucoside glucohydrolase, periplasmic/D‑lactate dehydrogenase, FAD‑binding, NADH independent | |||||
GCCCGACGTGGCAGCGAAAATGGTGCAAAAACCGTAGTTTGCCATAAGCATGATGGAGAGAGAAAAAGAATGCTCAGTTTATTGTCTGAATTTTCAAAATATTCACTCGCTGAATTGTTATACAAGGCGCTATTCTAGTTTGTGATATTTTTTCGCCACCACAAGGAGTGGAAAATGTCTTCCATGACAACAACTGATAATAAAGCCTTTTTGAATGAACTTGCTCGTCTGGTGGGTTCTTCACACCTGCTCACCGATCCCGCAAAAACGGCCCGCTA > CP009273/2215490‑2215767 | gCCCGACGTGGCAGCGAAAATGGTGCAAAAACCGTAGTTTGCCATAAGCATGATGGCGAGAGAAAAAGAATGCTCAGTTTATTGTCTGAATTTTCAAAATATTCACTCGCTGAATTGTTATACAAGGCGCTATTCTAGTTTGTGa > 1:180449/1‑145 (MQ=255) cattataacgaatggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcggcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCTATTCTAGTTTGTGATAttttt > 2:317136‑M2/123‑145 (MQ=255) cGAAAATGGTGCAAAAACCGTAGTTTGCCATAAGCATGATGGAGAGAGAAAAAGAATGCTCAGTTTATTGTCTGAATTTTCAAAATATTCACTCGCTGAATTGTTATACAAGACGCTATTCTAGTTTGTGATATTTTTTCGccac > 2:336786/1‑145 (MQ=255) tggcatccgcatagtgcgctgggttatcgctcgccacgggaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCTATTCTAGTTTGTGATATTTTTTCGCCACCACaa < 2:279041‑M2/35‑1 (MQ=255) tttGCCATAAGCATGATGGAGAGAGAAAAAGAATGCTCAGTTTATTGTCTGAATTTTCAAAATATTCACTCGCTGAATTGTTATACAAGGCGCTATTtagactggccccctgaatctccagacaaccaatatcactaaaataagt < 1:122688‑M2/145‑49 (MQ=255) ctgggttatcgctcgccacggcaatatctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCTATTCTAGTTTGTGATATTTTTTCGCCACCACAAGGAGTGGAAAATGTCTTc < 1:115727‑M2/53‑1 (MQ=255) agagagaAAAAGAATGCTCAGTTTATTGTCTGAATTTTCAAAATATTCACTCGCTGAATTGTTATACAAGGCGCTATTCTAGTTTGTGATATTTTTTCGCCACCACAAGGAGTGGAAAATGTCTTCCATGACAACAACTGataat > 2:266398/1‑145 (MQ=255) gaAAAAGAATGCTCAGTTTATTGTCTGAATTTTCAAAATATTCACTCGCTGAATTGTTATACAAGGCGCTATTCTAGCTTGTGATATTTTTTCGCCACCACAAGGAGTGGAAAATGTCTTCCATGACAACAACTGATAATAAAGc > 2:226986/1‑145 (MQ=255) ctgcggcagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCTATTCTAGTTTGTGATATTTTTTCGCCACCACAAGGAGTGGAAAATGTCTTCCCTGACAACAACAGAAAATAAAACctg > 1:241802‑M2/66‑144 (MQ=255) cagcgggcttgtaatgggttaagtgataacagatgtctggaaatataggggcaaatccaCTATTCTAGTTTGTGATATTTTTTCGCCACCACAAGGAGTGGAAAATGTCTTCCATGACAACAACTGATAATAAAGCCTTTTtgaa < 2:261563‑M2/86‑1 (MQ=255) ttATTGTCTGAATTTTCAAAATATTCACTCGCTGAATTGTTATACAAGGCGCTATTtagactggctccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaagactagtttttagactagtcattggagaac > 2:335892‑M2/1‑56 (MQ=255) tATTGTCTCAATTTACAAAATAATCACTCGCTGAATTGTTATACAAGGCGCTATTCTAGTTTGTGATATTTTTTCGCCACCACAAGGAGTGGAAAATGTCTTCCATGACAACAACTGATAATAAAGCCTTTTTGAATGAACttac < 2:13781/145‑3 (MQ=255) tCTGAATTTTCAAAATATTCACTCGCTGAATTGTTATACAAGGCTCTATTCTAGTTTGTGATATTTTTTCGCCACCACAAGGAGTGGAAAATGTCTTCCATGACAACAACTGATAATAAAGCCTTTTTGAATGAACTTGCTCGTc < 1:257586/145‑1 (MQ=255) tCTGAATTTTCAAAATATTCACTCGCTGAATTGTTATACAAGGCGCTATTCTAGTTTGTGATATTTTTTCGTCACCACAAGGAGTGGAAAATGTCTTCCATGACAACAACTGATAATAAAGCCTTTTTGAATGACCTTGCTCGTc < 2:87275/145‑1 (MQ=255) gAATTTTCAAAATATTCACTCGCTGAATTGTTATACAAGGCGCTATTtagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtctttagactagacagtggagcacggatgattg < 1:120558‑M2/145‑99 (MQ=255) gAATTTTCAAAATATTCACTCGCTGAATTGTTATACAAGGCGCTATTCTAGTTTGTGATATTTTTTCGCCACCACAAGGAGTGGAAAATGTCTTCCATGACAACAACTGATAATAAAGCCTTTTTGACTGAACTTGATCGTCtgg > 2:54523/1‑145 (MQ=255) tttCAAAATATTCACTCGCTGAATTGTTATACAAGGCGCTATTCTAGTTTGTGATATTTTTTCGCCACCACAAGGAGTGGAAAATGTCTTCCATGACAACAACTGATAATAAAGCCTTTTTGAATGCACTTGCTCGTCTGGTggg < 2:167804/145‑1 (MQ=255) gaaatataggggcaaatccaCTATTCTAGTTTGTGATATTTTTTCGCCACCACAAGGAGTGGAAAATGTCTTCCATGACAACAACTGATAATAAAGCCTTTTTGAATGAACTTGCTCGTCTGGTGGGTTCTTCACACCTGCTCAc < 2:14129‑M2/125‑1 (MQ=255) tATTCTAGTTTGTGATATTTTTTCGAATACCGTAGGACAATAAAATGTCTTCCATGACAACAACTGATAATAAAGCCTTTTTGAATGAACTTGCTCGTCTGGTGGGTTCTTCACACCTGCTCACCGATCCCGCAAAAACGGCCCg < 2:221214/145‑1 (MQ=255) ttagactggccccctgaatctccagacaaccaatatcacttaaataagtgatcgtcttcctactagtttttcgcctagtcattggagaacagatgattggtgtcttagggccggagaaacgcagactgcgtacctcacagggaaa < 2:194499‑M2/145‑145 (MQ=255) ttagactggccccctgaatctccagacaaccaatatcacttaaataagtgatagtcttaatactagtttttagactagtcattggagaacagatgattgatgtcttagggccggagaaacgcagacggcgtaccacacaggaaaa > 1:363159‑M2/1‑1 (MQ=255) | GCCCGACGTGGCAGCGAAAATGGTGCAAAAACCGTAGTTTGCCATAAGCATGATGGAGAGAGAAAAAGAATGCTCAGTTTATTGTCTGAATTTTCAAAATATTCACTCGCTGAATTGTTATACAAGGCGCTATTCTAGTTTGTGATATTTTTTCGCCACCACAAGGAGTGGAAAATGTCTTCCATGACAACAACTGATAATAAAGCCTTTTTGAATGAACTTGCTCGTCTGGTGGGTTCTTCACACCTGCTCACCGATCCCGCAAAAACGGCCCGCTA > CP009273/2215490‑2215767 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |