New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	4493397 =	84 (1.120)	6 (0.090)	5/256	9.5	7.6%	intergenic (‑149/‑478)	insG/yjhB	IS4 transposase/putative transporter
	?	CP009273	4493417 =	74 (1.140)					intergenic (‑169/‑458)	insG/yjhB	IS4 transposase/putative transporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTGAATAAAACTCCCTTCGTCAAATGAGGAAAGACTGAGAGGTTATTACTTTAGCTTACGTTATAGCTGTTTTCCTTTGCAGTATTTCTTTGCTTTTCTGTATACCTTTATACCTGTTATACCAGATCAAAAAACAAGCAATCCACATAACAAAACGCGTTTTGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4493563‑4493397 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taacaaaacgcgttttgttaTGTGGATTGCTTGTTTTTTGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTC  >  CP009273/4493417‑4493561                                                                                                                                                                                                                                                                                                                          TTGAATAAAACTCCCTTCATCAAATAAGGAAAGACTGAGAGGTTATTACTTTAGCTTACGTTATAGCTGTTTTCCTTTGCAGTATTTCTTTGCTTTTCTGTATACCTTTATACCTGTTATACCAGATCAAAAAACAAGCAATCCACATA                                                                                                                                                                     >  2:1209418/1‑149  TGAATAAAACTCCCTTCGTCAAATGAGGAAAGACTGAGAGGTAATGACTTTAGCTTACGTTATAGCTGTTTTCCTTTGCAGTATTTCTTTGCTTTTCTGTATACCTTTATACCTGTTATACCAGATCAAAAAACAAGCAATCCACATAA                                                                                                                                                                    >  2:293825/1‑149         AACTCCCTTCGTCAAATGAGGAAAGACTGAGAGGTTATTACTTTAGCTTACGTTATAGCTGTTTTCCTTTGCAGTATTTCTTTGCTTTTCTGTATAACTTTAGTTCTGTTATAACAGATCAAAAAACAAGCAATCCACATAACAAAACG                                                                                                                                                             >  2:280113/1‑149                   GTCAAATGAGGAAAGACTGAGAGGTTATTACTTTAGCTTACGTTCTCGCTGATTTCCTTTGCAGTATTTCTTTGCTTTTCTGTATACCTTTATACCTGTTATACCAGATCAAAAAACAAGCAATCCACATAACAAAACGCGTTTTGTTA                                                                                                                                                   <  2:884930/149‑1                      aacggtgtAAAGCCTGAGAGGCTCTTACTTTAGCTTCCGTCATAGCTGTTTCCCTTTGCAGTCTTTCTTTGCTTTTCTGTAGACCTTTATACCTGTTATACCAGATCAAAAAACAAGCAATCCACATAACAAAACGCGTTTTGTTATGT                                                                                                                                                <  2:453828/141‑1                                                                           CTTTGCAGTATTTGTTTGCTTTTCTGTATACCTTTATACCTGTTATACCAGATCAAAAAACAAGCAATCCACATAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGC                                                                                           <  2:13570/149‑1                                                                                                          CTTTATACCTGTTATACCAGATCAAAAAACAAGCAATCCACATAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAA                                                            >  2:640619/1‑149                                                                                                                                                  CATAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTTTTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGAAATAACCTCTCAGTCTTTGCTCATTTt                    >  1:459622/1‑148                                                                                                                                                  CATAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCATTTG                    >  1:460270/1‑149                                                                                                                                                   ATAACAAAACGCGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCATTTGA                   >  1:896014/1‑149                                                                                                                                                              CGTTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTT        <  2:362455/149‑1                                                                                                                                                                TTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTT      <  1:640619/149‑1                                                                                                                                                                TTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTT      >  2:1219077/1‑149                                                                                                                                                                TTTTGTTATGTGGATTGCTTGTTTTTTGATCTGGTATAACAGGTAGAAAGGTATACAGAAAAGCACAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCATTCCTCATTTGACGAAGGGAGTTTT      >  1:288789/1‑149                                                                                                                                                                    GTTATGTGGATTGCTTTGTTTTTGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTC  <  2:1092374/149‑1                                                                                                                                                                                                                                                                                                                          TTGAATAAAACTCCCTTCGTCAAATGAGGAAAGACTGAGAGGTTATTACTTTAGCTTACGTTATAGCTGTTTTCCTTTGCAGTATTTCTTTGCTTTTCTGTATACCTTTATACCTGTTATACCAGATCAAAAAACAAGCAATCCACATAACAAAACGCGTTTTGTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP009273/4493563‑4493397 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑taacaaaacgcgttttgttaTGTGGATTGCTTGTTTTTTGATCTGGTATAACAGGTATAAAGGTATACAGAAAAGCAAAGAAATACTGCAAAGGAAAACAGCTATAACGTAAGCTAAAGTAATAACCTCTCAGTCTTTCCTCATTTGACGAAGGGAGTTTTATTC  >  CP009273/4493417‑4493561

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.