New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1203246 =	25 (1.060)	5 (0.240)	5/238	NT	23.2%	coding (290/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	CP009273	1205075 =	11 (0.530)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

TGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCA  >  CP009273/1203108‑1203382                                                                                                                                           |                                                                                                                                         tggAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGGAAACCTTGGTTTGGga                                                                                                                                >  2:46477/1‑149 (MQ=255)   gAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTCAGCCGCCAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGCCCCTCGAAAACCTTGGgtt                                                                                                                                    >  1:231480/1‑143 (MQ=17)      gCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTggg                                                                                                                                 >  1:59103/1‑143 (MQ=255)      gCATCCGGTGCCAGCCGGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTggg                                                                                                                                 <  1:333840/143‑1 (MQ=255)             gTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGa                                                                                                                          <  1:381235/143‑1 (MQ=255)                  gttgtagatctgtgttctggttatttgttgatacgcgtacatagtcaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCaa                                                                                                               >  2:305395‑M1/122‑149 (MQ=255)                          tctgggttctggtcctttgttgatacgcgtacatagccaataagcatgttaaatccccctggtatcagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCaa                                                                                                       >  2:209571‑M1/114‑149 (MQ=255)                            tgtgttctggtcatttgttgatacgcgtacatagccaataagcatgttaaatccccctggtaaaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATgca                                                                                                           <  1:317794‑M1/32‑1 (MQ=255)                                   gcACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACgg                                                                                                    >  1:22149/1‑143 (MQ=255)                                      cGACCAGTTACTTACCTCCCTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGCCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCCAAAACCCTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTa                                                                                                 <  1:249537/143‑1 (MQ=21)                                       gACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGACTCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCCAAACTCAATGCAGCAACGGCTACATTAgg                                                                                          >  2:87900/1‑149 (MQ=255)                                       gACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTATAACATATGTTGGTTTGGGAGAAGGCGCAAAACTCAATGCAGCAACGGATACATTAgg                                                                                          >  2:100564/1‑149 (MQ=21)                                       gACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATAGCACCGTGCGACCGGCTCTCTAAAACCGTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCtcc                                                                                                >  1:231013/1‑141 (MQ=21)                                                   acCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAACTCGGATGGCACTGTGCACACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACCCAATGCAGCCACGGCTACATTAGGACGCAc                                                                                    >  1:343170/1‑143 (MQ=255)                                                   acCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCAc                                                                                    >  1:159157/1‑143 (MQ=255)                                                              ggcgcGGCTGTTAAGCCGCACGAATCCGTGTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAg                                                                         <  1:331340/142‑1 (MQ=255)                                                               gcgcCGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATAcc                                                                  <  2:66729/149‑1 (MQ=255)                                                                        ttAAGCCGGAAGAATCCGCTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAAGCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCCACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGt                                                               <  1:100596/143‑1 (MQ=255)                                                                           aGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATtgg                                                      <  2:120558/149‑1 (MQ=255)                                                                                          aaagcaggaatgatgccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTCTACCGGTTATGATTGGTGGTATTGAGCAATc                                       <  2:272820‑M1/100‑1 (MQ=255)                                                                                                     cAAATCGGATGGCACTGCGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCATCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTaa                                  <  1:23775/143‑1 (MQ=255)                                                                                                       aaTCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACGTTAGGACCCACCGGTTTCATAGCTATACCGGTTATGATCGGTGGTATTGAGCAATCAGTAGTc                                >  1:96699/1‑143 (MQ=255)                                                                                                         ccatttgcttgttatttcttcattttcataaacgTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCAt                              <  1:339231‑M1/109‑1 (MQ=255)                                                                                                             aTGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTAAATGCAGAAAAGGCTACATTAGGACGCACCGGTTTAATAGCTATACCGGGTATGGTCGGTGGTATGGAGCAAGCAGTAAGCAGTCAg                          >  1:128947/1‑143 (MQ=37)                                                                                                                gCACTGTGCAAACGGCTCTCCAAAACCGTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTgg                       <  1:81382/143‑1 (MQ=255)                                                                                                                 cACTGTGCAAACGGCTCTCGAAAACCTTGGTGTGGGAGAAGGAGCAAAAATCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGa                <  2:79763/149‑1 (MQ=255)                                                                                                                      tgCAAACGGCCCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGcc           <  2:25565/149‑1 (MQ=255)                                                                                                                             ggCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCg          <  1:37010/143‑1 (MQ=255)                                                                                                                               ctctCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCa  <  2:64821/149‑1 (MQ=255)                                                                                                                                tctcGAAAACCTTCGCACGGGAGTAGGAGCAAAACTCAATGCAGCAACGGCTACCTTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCACTCAGTAATCATTCAGTGGGGCGGGCATGCCTCaa       >  1:177018/1‑143 (MQ=255)                                                                                                                                           |                                                                                                                                         TGGAGGCATCCGGTGCCAGCCTGGAGAAGGGGCGGCACGACCAGTTACTTACCGCACTTCGCGCGCTGCTGTTAAGCCGCAAGAATCCGTTTGGCGATATCAAATCGGATGGCACTGTGCAAACGGCTCTCGAAAACCTTGGTTTGGGAGAAGGAGCAAAACTCAATGCAGCAACGGCTACATTAGGACGCACCGGTTTCATAGCTATACCGGTTATGATTGGTGGTATTGAGCAATCAGTAATCATTCAGTGGGGGTGGAATGCCGCAAAAGCA  >  CP009273/1203108‑1203382

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.