New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	1203246 =	25 (1.060)	5 (0.240)	5/238	NT	23.2%	coding (290/630 nt)	stfP	e14 prophage; uncharacterized protein
	?	CP009273	1205075 =	11 (0.530)					pseudogene (1/501 nt)	stfE	pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related

TAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAAC  >  CP009273/1204939‑1205195                                                                                                                                         |                                                                                                                         tAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTAt                                                                                                                    <  1:307397/143‑1 (MQ=255)                            atgattactgattgctcaataccaccaatcataaccggtatagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATgg                                                                                         <  1:339231‑M2/34‑1 (MQ=255)                                     gattgctcaataccaccaatcataaccggtagagctatgaaaccggtgcgtcctaatgtagccgttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCttt                                                                          <  2:272820‑M2/49‑1 (MQ=255)                                               cATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAAGCGGGACACCAACAGGTAATGCCGAGCCTTCTCCCAAACCAGCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCGTCATTCCTGCTTTTAca                                                                      >  1:52106/1‑142 (MQ=255)                                                                   ggtGGCGGAGGGGCTGAAGGCCCCGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCCTCCTTCCTGTTCTTACTAGGGGGATTTAACATGCTTa                                                  <  1:3077/141‑1 (MQ=255)                                                                   gTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAGACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCAACATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTggat                                            >  2:40367/1‑147 (MQ=255)                                                                               gCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTAc                                      >  1:331320/1‑143 (MQ=255)                                                                                      gCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGGAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACaaa                         >  2:43001/1‑149 (MQ=255)                                                                                             aaCCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATAGCCAg                  >  2:164020/1‑149 (MQ=255)                                                                                              aCCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATg                       >  1:185731/1‑143 (MQ=255)                                                                                                     ttgctgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTGATACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAAGGACCAGAACCCAGa          >  2:209571‑M2/37‑149 (MQ=255)                                                                                                        cAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGACCCCAGATCt       >  2:268162/1‑149 (MQ=255)                                                                                                         tgcattgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAAcaca            <  1:317794‑M2/111‑1 (MQ=255)                                                                                                            aGGGAATGCGAAGCGCTCTTCCAAACCTACGTTTATGAAAATGAAGAAATAACAAGAAAATGGTATCATTCCTTCTTTTATCAGGGGGATTTAACATGCTTACAACCTCGTTTCTCTTATCAACAAATGACCAGAACACAGAt         <  1:83450/143‑1 (MQ=255)                                                                                                             ttgagttttgctccttctcccaaaccaaCGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGACTATGTACGCGTATCAACAAATAACCAGAACACAGATCTACAAc  >  2:305395‑M2/29‑149 (MQ=255)                                                                                                              gTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAACTGACCAGAACACAGATCt       >  1:240330/1‑143 (MQ=255)                                                                                                                                         |                                                                                                                         TAAGCCTTTGCCAGTTCCGGGTATTCTTCAGCAGAAAAAGCGGCACCATTGCATTTCAGCCAGCCTGTTGGCGGAGTGGCTGAAGGCCACGGAACCGGGACACCAACAGGTAATGCAGAGCCTTCTCCCAAACCAACGTTTATGAAAATGAAGAAATAACAAGCAAATGGCATCATTCCTGCTTTTACCAGGGGGATTTAACATGCTTATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAAC  >  CP009273/1204939‑1205195

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.