| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3628663 | 58 (0.950) | 51 (0.830) | 44/292 | 0.4 | 46.8% | coding (463/1053 nt) | yhiM | acid resistance protein, inner membrane |
| ? | CP009273 | 3645396 = | NA (NA) | noncoding (1195/1195 nt) | IS5 | repeat region | |||||
CCGGCCATGTTATTTTCGGCGTTGGTATGATTGCCGCCTGTGTATCGACGGTGGCAGCGTCATCCGGTCACTTTCTGCTCATTCCCAAAAATGCAGCGGGGAGCAAGAGCGACGGAACACCGGTACAGGCTTATTCTTCATTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3628520‑3628663‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTT > CP009273/3645396‑3645541 CCGGCCATGTTATTTTCGGCGTTGGTATGATTGCCGCCTGTGTATCGACGGTGGCAGCGTCATCCGGTCACTTTCTGCTCATTCCCAAAAATGCAGCGGGGAGCAAGAGCGACGGAACACCGGTGCAGGCATATTCTTCATTAAGGAAG > 2:396072/1‑149CCGGCCATGTTATTTTCGGCGTTGGGATGATTGCCGCCTGTGTATCGACGGTGGCAGCGTCATCCGGTCACTTTCTGCTCATTCCCAAAAATGCAGCGGGGAGCAAGAGCGACTGAACACCGGTACAGGCTTATTCTTCATTAAGGAAG < 2:612416/149‑1 GGCCATGTTATTTTCGGCGTTGGTATGATTGCCGCCTGTGTATCGACGGTGGCAGCGTCATCCGGTCACTTTCTGCTCATTCCCAAAAATGCAGCGGGGAGCCAGAGCGACGGAACACCGGTACAGGCTTATTCTTCATTAAGGAAGGT > 2:582856/1‑149 CCATGTTTTTTTCGGCGTTGGTATGATTGCCGCCTGTGTATCGACGGTGGCAGCGTCATCCGGTCACTTTCTGCCCATTCCCAAAAATGCAGCGGGGAGCAAGAGCGACGGAACACCTGTACAGGCTTATTCTTCATTAAGGAA < 1:526838/144‑1 TATTTTCGGCGTTGGTATGATTGCCGCCTGTGTATCGACGGTGGCAGCGTCATCCGGTCACTTTCTGCTCATTCCCAAAAATGCAGCGGGGAGCAAGAGCGACGGAACACCGGTACAGGCTTATTCTTCATTAAGGAAGGTGCG > 1:591493/1‑144 TCGGCGTTGGTATGATTGCCGCCTGTGTATCGACGGTGGCAGCGTCATCCGGTCACTTTCTGCTCATTCCCAAAAATGCAGCGGGGAGCAAGAGCGACGGAACACCGGTACAGGCTTCTTCTTCATTAAGGAAGGTGCGAATAA > 1:505293/1‑144 GCGTTGGTATGATTGCCGCCTGTGTATCGACGGTGGCAGCGTCATCCGGTCACTTTCTGCTCATTCCCAAAAATGCAGCGGGGAGCAAGAGCGACGGAACACCGGTACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCG > 1:118266/1‑144 GTTGGTATGATTGCCGCCTGTGTATCGACGGTGGCAGCGTCATCCGGTCACTTTCTGCTCATTCCCAAAAATGCAGCGGGGAGCAAGAGCGACGGAACACCGGTACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAAT > 2:992657/1‑149 TATGATTGCCGCCTGTGTATCGACGGTGGCAGCGTCATCCCGTCACTTTCTGCTCATTCCCAAAAATGCAGCGGGGACCAAGAGCGACGGAACACCGGTACAGGCTTATTCTTCATTAGGGAAGGTGCGAATACGCGGGGCAAT > 1:849961/1‑144 ttgcTTGCCGCCTGTGTATCGACGGTGGCAGCGTCAGCCGGTCACTTTCTGCTCATTCCCAAAAATGCAGCGGGGAGCAAGAGCGACGGAACACCGGTCCAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATT < 1:625668/140‑1 TGATTGCCGCCTGTGTATCGACGGTGGCAGCGTCATCCGGTCACTTTCTGCTCATTCCCAAAAATGCAGCGGGGAGCAAGAGCGACGGAACACCGGTACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTC > 1:666784/1‑144 ATTGCCGCCTGTGTATCGACGGTGGCAGCGTCATCCGGTCACTTTCTGCTCATTCCCAAAAATGCAGCGGGGAGCAAGAGCGACGGAACACCGGTACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGG > 2:932930/1‑149 ATTGCCGCCTGTGTATCGACGGTGGCAGCGTCATCCGGTCACTTTCTGCTCATTCCCAAAAATGCAGCGGGGAGCAAGAGCGACGGAACACCGGTACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGG > 2:118901/1‑149 GCCTGTGTATCGACGGTGGCAGCGTCATCCGGTCACTTTCTGCTCATTCCCAAAAATGCAGCGGGGAGCAAGAGCGACGGAACACCGGTACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGC > 1:592443/1‑144 TGTATCGACGGTGGCAGCGTCATCCGGTCACTTTCTGCTCATTCCCAAAAATGCAGCGGGGAGCAAGAGCGACGGAACACCGGTACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACT > 1:508922/1‑144 ttagCGAGGGTGGCAGCGTCATCCGGTCACTTTCTGCTCATTCCCAAAAATGCAGCGGGGAGCAAGAGCGACGGAACACCGGTACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTC < 1:454556/140‑1 TCGACGGTGGCAGCGTCATCCGGTCACTTTCTGCTCATTCCCAAAAATGCAGCGGGGAGCAAGAGCGACGGAACACCGGTACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTT > 2:471518/1‑149 GACGGTGGCAGCGTCATCCGGTCACTTTCTGCTCATTCCCAAAAATGCAGCGGGGAGCAAGAGCGACGGAACACCGGTACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCA < 2:375022/149‑1 ACGGTGGCAGCGTCATCCGGTCACTTTCTGCTCATTCCCAAAAATGCAGCGGGGAGCAAGAGCGACGGAACACCGGTACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCAT > 1:462331/1‑144 GTGGCAGCGTCATCCGGTTACTTTCTGCTCATTCCCAAAAATGCAGCGGGGAGCAAGAGCGACGGAACACCGGTACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTC < 2:75375/149‑1 GGCAGCGTCATCCGGTCACTTTCTGCTCATTCCCAAAAATGCAGCGGGGAGCAAGAGCGACGGAACACCGGTACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCAT > 1:275482/1‑144 GCAGCGTCATCCGGTCACTTTCTGCTCATTCCCAAAAATGCAGCGGGGAGCAAGAGCGACGGAACACCGGTACAGGCTTATTCGTCATTAAGGAAGGTGCGAATAAGGGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATT > 1:252556/1‑144 CGTCATCCGGTCACTTTCTGCTCATTCCCAAAAATGCAGCGGGGAGCAAGAGCGACGGAACACCGGTACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTT < 1:839723/144‑1 CGGTCACTTTCTGCTCATTCCCAAAAATGCAGCGGGGAGCAAGACCGACGGAACACCGGTACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTT < 1:649495/144‑1 TTTCTGCTCATTCCCACAAATGCAGCGGGGAGCAAGAGCGACGGAACACCGGTACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTT < 2:130922/149‑1 TTTCTGCTCATTCCCAAAAATGCAGCGGGGAGCAAGAGCGACGGAACACCGGTACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTGATGTTTGAGCCGA > 1:265601/1‑144 TCATCCCCAAAACTGCAGCGGGGAGCAAGAGCGACGGAACACCGGTACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCG < 2:778260/149‑1 TCCCAAAAATGCAGCGGGGAGCAAGAGCGACGGAACACCGGTACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCC > 1:408297/1‑144 CCCAAAAATGCAGCGGGGAGCAAGAGCGACGGAACACCGGTACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAAT < 2:564005/149‑1 CCAAAAATGCAGCGGGGAGCAAGAGCGACGGAACACCGGTACGGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGATCCGATTTTTTCTCCCGTAAATG > 2:180869/1‑149 CCAAAAATGCAGCGGGGAGCAAGAGCGACGGAACACCGGTACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGT > 1:846023/1‑144 GCAGCGGGGAGCAAGAGCTAAGGAACATCGGTACAGGCTTATTCTTCATGAAGGAAGGTGCGAATAATCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCTATTTTTTCTCCCGTAAATGCCT < 1:648731/144‑1 CAGCGGGGGGCAAGTGGGACGGAACACCGGTACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTT < 1:628543/144‑1 aGGGGAGCAAGAGCGACGGAACACCGGCACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGTTTTTTTCTCCCGTAAATGCCTTGAATCAGC < 2:317152/148‑1 cAGCAAGAGCGACGGAACACCGGTACAGTCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGTGTAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAG < 1:918242/143‑1 AGCAAGAGCGAAGGAACACCGGTACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATT < 2:651107/149‑1 GCAAGTGCGGCGGATCACCGGGACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTT < 2:199021/149‑1 AAGAGCGACGGAACACCGGTACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTCCATCAGCCTA > 1:458775/1‑144 AGCGACGGAACACCGGTACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGGTTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACC > 2:459389/1‑149 CGGAACACCGGTACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTC < 2:514092/149‑1 CACCGGTACATGCTTATGCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTC < 1:2967/144‑1 GGTACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCGGTCATTTCATTTCTTCCTGTTTGAGCGGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCG < 1:875130/144‑1 GGTACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTGTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCG < 1:875173/144‑1 ACAGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTGCATGTTTGAGTCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAA < 2:447297/149‑1 AGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGG > 2:818194/1‑149 AGGCTTATTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTAATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATATAGACCGTTTCTTCGCCATTTAAGG > 2:640087/1‑149 TTATTCTTCATTAAGGAAGGTGCTAATAAGCGGGGAAATTCTTCTCGGCTGACCCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACTGTTTCTTCGCCATTTAAGGCGTT < 2:578705/149‑1 TTCTTCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCG < 1:958417/144‑1 TCATTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTAATCCCCA > 2:83414/1‑149 TCAGTAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCA < 2:130178/149‑1 TAAGGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTACATGCCGTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTT < 2:553875/149‑1 CCGGCCATGTTATTTTCGGCGTTGGTATGATTGCCGCCTGTGTATCGACGGTGGCAGCGTCATCCGGTCACTTTCTGCTCATTCCCAAAAATGCAGCGGGGAGCAAGAGCGACGGAACACCGGTACAGGCTTATTCTTCATTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/3628520‑3628663‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGAAGGTGCGAATAAGCGGGGAAATTCTTCTCGGCTGACTCAGTCATTTCATTTCTTCATGTTTGAGCCGATTTTTTCTCCCGTAAATGCCTTGAATCAGCCTATTTAGACCGTTTCTTCGCCATTTAAGGCGTTATCCCCAGTTT > CP009273/3645396‑3645541 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |