| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3661115 = | 88 (1.440) | 4 (0.070) | 4/278 | 8.8 | 5.0% | intergenic (‑175/+36) | gadA/yhjA | glutamate decarboxylase A, PLP‑dependent/putative cytochrome C peroxidase |
| ? | CP009273 | 3661143 = | 69 (1.180) | intergenic (‑203/+8) | gadA/yhjA | glutamate decarboxylase A, PLP‑dependent/putative cytochrome C peroxidase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TGATGCTGCGCTATCAGGTAGGCAAAGAGCTGCCGCAGGAGGATGTGGATGATATCGTAGCTTTCCTGCACAGTCTGAACGGGGTGTACACGCCGTATATGCAGGATAAACAATAATTAATTTGATCGCCCGAACAGCAATGTTTGGGCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3661266‑3661115‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcgatCAAATTAATTATTGTTTATCCTGCATATACGGCGTGTACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGT > CP009273/3661143‑3661288 TGATGCTGCGCTATCAGGTAGGCAAAGAGCTGCCGCAGGAGGATGTGGATGATATCGTAGCTTTCCTGCACAGTCTGAACGGGGTGTACACGCCGTATATGCAGGATAAACAATAATTAATTTGATCGCCCGAACAGCAATGTTTGGGC > 2:186776/1‑149 ATGCTGCGCTATCAGGTAGGCAAAGAGCTGCCGCAGGAGGATGTGGATGATATCGTAGCTTTCCTGCACAGTCTGAACGGGGTGTACACGCTGTATATGCAGGATAAACAATAATTAATTTGATCGCCCGAACAGCAATGTTTGGGCGA > 2:867295/1‑149 GCGCTATCAGGTAGGCAAAGAGCTGCCGCAGGAGGATGTGGAAGATATCGTAGCTGTCCTGCACAGTCTGAACGGGGTGTACACGCCGTATATGCAGGATAAACAATAATTAATTTGATCGCCCGAACAGCACTGTTTGGGCGA > 1:457870/1‑144 CGTATATGCAGGATAAACAATAATTAATTTGATCGCCCGAACAGCTATGTTTGGGCGATCAAATTACTTATTGTTTATCCTGCTTTTTCGCCGTAGACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCCCATCCTCCTac > 2:502407/1‑147 CAGGATAAACAATAATTAATTTGATCGCCCGAACAGCAATGTTTGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGTACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGC < 1:452006/144‑1 GCCCGAACAGCAATGTTTGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGTACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACAGCCTCCTGCGGCATCTCTTTGCCTACCTGATAGCGCAc > 1:602870/1‑143 TGGGCGATCAAATTAATTATTGTTTATCCTGCATATACGGCGTGTACACCCCGTTCAGACTGTGCAGGAAAGCTACGATAGCATCCACATCCTCCTGCGGCAGCTCTTTGCCTGCCTGATAGCGCAGCATCAGTTTACCCGCCC > 1:66150/1‑144 GATCAAATTAAGTATTGTTTATCCTGCATATACGGCGTGCACACCCCGTGCAGACTGTGCAGGAAAGCTACGATAGCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGT < 2:208620/149‑1 TGATGCTGCGCTATCAGGTAGGCAAAGAGCTGCCGCAGGAGGATGTGGATGATATCGTAGCTTTCCTGCACAGTCTGAACGGGGTGTACACGCCGTATATGCAGGATAAACAATAATTAATTTGATCGCCCGAACAGCAATGTTTGGGCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3661266‑3661115‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gggcgatCAAATTAATTATTGTTTATCCTGCATATACGGCGTGTACACCCCGTTCAGACTGTGCAGGAAAGCTACGATATCATCCACATCCTCCTGCGGCAGCTCTTTGCCTACCTGATAGCGCAGCATCAGTTTCACCGCCCCGTCCAGCGT > CP009273/3661143‑3661288 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |