| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2096424 | NA (NA) | 38 (1.430) | 32/276 | NT | 65.5% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 2427745 | 20 (0.750) | coding (476/660 nt) | dedA | DedA family inner membrane protein | |||||
CGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCT‑CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2096277‑2096424‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAGGATAACCTTAAGCTGCTGATCGTCGGGATTATTGTGGTTTCTATTTTGCCGGGCGTCATCGAAA < CP009273/2427745‑2427602 cgcGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCGTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCAGGATGAACCCTGTTCTATGGCT‑CCAGATGACAAACATGATCTCATATCCGGGACTTGTTCGCACCTTCCA < 2:459258/146‑1 GGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCT‑CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCAT > 1:416015/1‑149 GGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGAATCATGATGAACCCTGTT‑TGCGCTTCCCAGTTGACAAACATGATCTCATATCAGGGCCGTGTTCGCCCCTTCCAg > 1:204696/1‑148 AAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCT‑CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGT > 1:385406/1‑149 agTCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCT‑CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCG < 1:433142/147‑1 AATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCT‑CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCG < 1:433330/149‑1 AATCTCTTTCCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCT‑CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCG < 1:433351/149‑1 TCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCT‑CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGAGCGGCGC > 1:384719/1‑149 cCTGACGGCGCTTACGTCTGAATTCAGTGTCGGCGAAGGTAAGTTGATGCCTCATGATGATCCCTGTTCTATGGCT‑CCAGATGACAAACATTATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGG < 2:173306/148‑1 TCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCT‑CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGG < 1:226772/149‑1 ACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGCGCTGGTGTCTATGGCT‑CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTAC < 1:341209/149‑1 gggGCTCACTGCTGAAGTGACTGGCGGCGAAGGTAAGGTGATGACTCATGATGAACCCTGTTCTATGGCT‑CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTG < 2:145486/146‑1 GCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCT‑CCAGATGACAAACATGCTCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTAATGC > 1:327797/1‑149 CGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCT‑CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCT < 2:181464/149‑1 GCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCT‑CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGGTT > 2:62376/1‑149 GCTTACTGCTGAATTCACTGGCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCT‑CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTT < 1:464291/149‑1 TTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTGCTATGGCT‑CCAGATCCCAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTT < 2:117920/149‑1 TTACTGCTGAATTCACCGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCACGTTCTATGGCT‑CCAGTTGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTGGTGGGTACTGCTTTT > 2:331127/1‑149 agTGTCTGCGAAGGTAGGTTGTTGACTCATGATGAGCCCTGTTCTATGGCT‑CCAGATGACAAACATGGTCTCATATCAGTGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCT < 2:25437/147‑1 ACTGTCGGCGAAGGTAAGTTGATGACTCATGATGATCCCTGTTCTATGGCT‑CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATATCGTGATCGGCGCACTGTTGTGCGTACTGCTTTTTACCTACGCAGGCT < 1:261189/149‑1 TCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCT‑CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTT > 2:406366/1‑149 AAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCT‑CCAGAGGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGGTCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGG < 1:70966/149‑1 AGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCT‑CCAGATGACACACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGAGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCCACGCAGGCgactcttccggg > 2:273686/1‑137 TGATGCCGCATGTTGAACCCTGTTCTATGTCT‑CCAGATTACAATCATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTTATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCC < 2:8873/149‑1 ATGACTCATGATGAACCCTGTTCTATGGCT‑CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTGCGCAGGCTATTTCTTCGGTACAATCCCGA < 1:283998/149‑1 TGACTCATGATGAACCCTGTTCTATGGCT‑CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGAT < 1:21959/149‑1 ATGATGAACCCTGTTCTATGGCT‑CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGCTGGTTCA > 1:187969/1‑149 TGATGAACCCTGTTCTATGGCT‑CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAG < 1:33545/149‑1 GATGAACCCTGTTCTATGGCT‑CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTCCCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAGG > 2:248085/1‑149 GAACCCTGTTCTATGGCT‑CCAGATGACAAACATGATCTCATATCAGGGACTTGATCGCACCTTCCATGACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCGATTTCTTAGGTACAATCCTGATGGTTCGGGGTA > 1:284735/1‑149 TGTTCTATGGCT‑CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAGGATAACCTTA > 1:298068/1‑149 ATGGCC‑CCAGATGACAACCATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAGGATAACCTTAAGCTGC < 1:150935/149‑1 ACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAGGATAACCTTAAGCTGCTGATCGTCGGGAT > 1:103301/1‑149 AAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAGGATAACCTTAAGCTGCTGATCGTCGGGAGTA > 1:306936/1‑149 ATGATCTCATATCAGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAGGATAACCTTAAGCTGCTGATCGTCGGGATTATTGT < 2:146901/149‑1 TATCAGGGACTTGTTCGCACCTTCCATAACGTGTTCGGTGTACGGTGGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAGGATAACCTTAAGCTGCTGATCGTCGGGATTATTGTGGTTTCTAT < 1:317764/149‑1 AGGGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGGGGGTACTGCTTTTTACCTACGCAGGCTATTTCTCCGGTACAATCCCGATGGTTCAGGATAACCTTAAGCTGCTGATCGTCGGGATTATTGTGGTTTCTATTTTG < 1:163347/149‑1 GGACTTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAGGATACCCTTTAACTGCTGATCGTCGGGATTATTGTGGTTTCTATTGTGCC > 2:98388/1‑149 TTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAGGATAACCTTAAGCTGCTGATCGTCGGGATTATTGTGGTTTCTATTTTGCCGGGC > 1:420646/1‑149 TTGTTCGCACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAGGATAACCTTAAGCTGCTGATCGTCGGGATTATTGTGGTTTCTATTTTGCCGGGC > 2:422000/1‑149 CACCTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAGGATAACCTTAAGCTGCTGATCGTCGGGATTATTGTGGTTTCTATTTTGCCGGGCGTCATCG > 2:242496/1‑149 CTTCCATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAGGATAACCTTAAGCTGCTGATCGTCGGGATTATTGTGGTTTCTATTTTGCCGGGCGTCATCGAAA < 2:384719/149‑1 CGGGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCT‑CCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP009273/2096277‑2096424‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATAACGTGATCGGCGCACTGTTGTGGGTACTGCTTTTTACCTACGCAGGCTATTTCTTCGGTACAATCCCGATGGTTCAGGATAACCTTAAGCTGCTGATCGTCGGGATTATTGTGGTTTCTATTTTGCCGGGCGTCATCGAAA < CP009273/2427745‑2427602 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |