| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2096424 | NA (NA) | 38 (1.430) | 32/276 | NT | 65.5% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | CP009273 | = 2427745 | 20 (0.750) | coding (476/660 nt) | dedA | DedA family inner membrane protein | |||||
GATTATTTCGATGACGCCCGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATGGGTTTTGTCGAGATAACTGCGACG > CP009273/2427597‑2427893 | gATTATTTCGATGACGCCCGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTtat < 1:423877/149‑1 (MQ=255) tttCGATGACGCCCGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaag < 2:384719‑M2/149‑6 (MQ=255) cGATGACGCCCGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtg > 2:242496‑M2/1‑141 (MQ=255) gCCCGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaa > 1:420646‑M2/1‑134 (MQ=255) gCCCGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaa > 2:422000‑M2/1‑134 (MQ=255) gccgCAAAATAGAAACCACCATAATCCCGACGATCAGCAGCTTAAGTTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACgg < 2:187721/146‑1 (MQ=255) ccGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTTGGTAAAAAGCGGTACCCACAGCGGTGCGCCGATCACGTTATAAGCGGCGAAATGACgg < 2:140491/149‑1 (MQ=255) ccGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACgg > 2:336514/1‑149 (MQ=255) ccGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGGGCGCCGATCCCGTTATAAGCGGCGAAATGACgg > 2:433096/1‑149 (MQ=255) ggCACAATAGAAACCACAATAATCCCGACGATCAGCAGTTAAAGGGTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtcc > 2:98388‑M2/1‑130 (MQ=255) ggCAAAATAGAAACCACAATACTCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTa < 1:51128/149‑1 (MQ=255) ggCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCCCAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTa < 1:64425/149‑1 (MQ=255) cAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGGAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCCCAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccct < 1:163347‑M2/149‑22 (MQ=255) aaTAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGACCACGTTATAAGCGGCGAAAAGACGGCACGACa > 2:182112/1‑149 (MQ=255) aTAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACCACCGTACACCGAACACGTTATggaaggtgcgaacaagtccctgata < 1:317764‑M2/149‑26 (MQ=255) aaaCCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTgg > 2:418854/1‑149 (MQ=255) gccACAATAGTCCTGACGATCAGGAGCTTAAGGGGATCCTGACCCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGcc < 2:249116/148‑1 (MQ=255) acaATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcat < 2:146901‑M2/149‑35 (MQ=255) tactCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgttt > 1:306936‑M2/1‑111 (MQ=255) atCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgt > 1:103301‑M2/1‑109 (MQ=255) cccGATGAGCAGCATCTTAAGGTTAGCGTGAACCATCGGGAGGGAACCGAAGAAACAGCTTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGTCATGTGGCCCATTCGCGcaa < 2:327937/149‑1 (MQ=255) cccGACGATCAGCAGTTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGcaa < 2:387106/149‑1 (MQ=255) cccGACGATCAGCAGCTGAAGGTTAGCCGGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCTCGcaa < 2:327923/149‑1 (MQ=255) gcagcTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatggttgtcatctggggccat < 1:150935‑M2/149‑54 (MQ=255) tAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaaca > 1:298068‑M2/1‑90 (MQ=255) tACCCCGAACCATCAGGATTGTACCTAAGAAATCGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTCATggaaggtgcgatcaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttc > 1:284735‑M2/1‑84 (MQ=255) ccTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGGAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatc > 2:248085‑M2/1‑81 (MQ=255) cTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatca < 1:33545‑M2/149‑70 (MQ=255) tGAACCAGCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcat > 1:187969‑M2/1‑79 (MQ=255) aTCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtca < 1:21959‑M2/149‑77 (MQ=255) tCGGGATTGTACCGAAGAAATAGCCTGCGCAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcat < 1:283998‑M2/149‑78 (MQ=255) gggATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATAACGTTATggaaggtgcgaacaagtccctgatatgagatcatgattgtaatctggagacatagaacagggttcaacatgcggcatca < 2:8873‑M2/149‑80 (MQ=255) cccggaagagtcgcctgcgtgggtaAAAAGCAGTACCCACAACAGTGCGCCGATCTCGTTATggaaggtgcgaacaagtccctgatatgagatcatgtgtgtcatctggagccatagaacagggttcatcatgagtcatcaacttacct > 2:273686‑M2/13‑62 (MQ=255) ccGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGACCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcctctggagccatagaacagggttcatcatgagtcatcaacttacctt < 1:70966‑M2/149‑89 (MQ=255) cGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGaata > 1:59854/1‑149 (MQ=255) aaaTAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccga > 2:406366‑M2/1‑55 (MQ=255) aGCCTGCGTAGGTAAAAAGCAGTACGCACAACAGTGCGCCGATCACGATATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggatcatcatgagtcatcaacttaccttcgccgacagt < 1:261189‑M2/149‑99 (MQ=255) aGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtcactgatatgagaccatgtttgtcatctggagccatagaacagggctcatcatgagtcaacaacctaccttcgcagacact < 2:25437‑M2/149‑99 (MQ=255) gTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGttt > 2:9225/1‑149 (MQ=255) aaaaGCAGTACCCACCACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcaactggagccatagaacgtggttcatcatgagtcatcaacttaccttcgccgacggtgaattcagcagtaa > 2:331127‑M2/1‑37 (MQ=255) aaaaGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgggatctggagccatagcacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaa < 2:117920‑M2/149‑113 (MQ=255) aaaGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCa > 1:398405/1‑149 (MQ=255) aaGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgccagtgaattcagcagtaagc < 1:464291‑M2/149‑115 (MQ=255) aaCCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagc > 2:62376‑M2/1‑35 (MQ=255) aGCAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcg < 2:181464‑M2/149‑116 (MQ=255) gCATTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagagcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgc > 1:327797‑M2/1‑33 (MQ=255) cAGTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaccttaccttcgccgccagtcacttcagcagtgagcccc < 2:145486‑M2/149‑118 (MQ=255) gTACCCACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagacaccagcgcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgt < 1:341209‑M2/149‑120 (MQ=255) ccACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcaga < 1:226772‑M2/149‑124 (MQ=255) ccACAACAGTGCGCCGATCACGTTATggaaggtgcgaacaagtccctgatatgagataatgtttgtcatctggagccatagaacagggatcatcatgaggcatcaacttaccttcgccgacactgaattcagacgtaagcgccgtcagg < 2:173306‑M2/149‑124 (MQ=255) caGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATGGGttt > 1:240055/1‑149 (MQ=255) aGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATGGGtttt > 1:167498/1‑149 (MQ=255) gcgcCGCTCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaaga > 1:384719‑M2/1‑16 (MQ=255) ccGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAACCGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGGCCTGTTGCTCATAAAACGGATGGGTTTTGGCgcg > 2:133676/1‑147 (MQ=255) ccGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATGGGTTTTGTCgag > 2:396977/1‑149 (MQ=255) cGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccaggaaagagatt < 1:433351‑M2/149‑138 (MQ=255) cGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagatt < 1:433330‑M2/149‑138 (MQ=255) cGATCACGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagact < 1:433142‑M2/149‑138 (MQ=255) aTCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATGGGTTTTGTCGAGATa > 2:380373/1‑149 (MQ=255) aCGTTATggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttctt > 1:385406‑M2/1‑7 (MQ=255) ttATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATGGGTTTTGTCGAGATAACTGCg < 1:380373/149‑1 (MQ=255) ctggaaggggcgaacacggccctgatatgagatcatgtttgtcaactgggaagcgcaaacagggttcatcatgattcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtccc > 1:204696‑M2/2‑2 (MQ=255) aTggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcatcaacttaccttcgccgacagtgaattcagcagtaagcgccgtcagaccagaaaagagattttcttgtccc > 1:416015‑M2/1‑2 (MQ=255) tggaaggtgcgaacaagtcccggatatgagatcatgtttgtcatctggagccatagaacagggttcatcctgagtcatcaacttaccttcgccgacagtgaattcagcagtacgcgccgtcagaccagaaaagagattttcttgtcgcg < 2:459258‑M2/149‑149 (MQ=255) | GATTATTTCGATGACGCCCGGCAAAATAGAAACCACAATAATCCCGACGATCAGCAGCTTAAGGTTATCCTGAACCATCGGGATTGTACCGAAGAAATAGCCTGCGTAGGTAAAAAGCAGTACCCACAACAGTGCGCCGATCACGTTATAAGCGGCGAAATGACGGTACGACATGTGGCCCATTCCCGCAACAAACGGGGCGAACGTTCTGACGATCGGCACAAAACGGGCGAGAATAATCGTTTTGCCGCCATGTTTCTCATAAAACTGATGGGTTTTGTCGAGATAACTGCGACG > CP009273/2427597‑2427893 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |