mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.32.0b
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,355,014 | 0 | A | T | 22.9% | 84.3 / 10.2 | 48 | I226N (ATC→AAC) | rhmR | putative DNA‑binding transcriptional regulator for the rhm operon |
| Marginal new junction evidence (lowest skew 10 of 35 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 270331 = | NA (NA) | 7 (0.120) | 5/278 | 8.0 | NA | noncoding (126/335 nt) | IS911 | repeat region |
| ? | CP009273 | 270374 = | NA (NA) | noncoding (169/335 nt) | IS911 | repeat region | |||||
| * | ? | CP009273 | 3597572 = | 67 (1.090) | 5 (0.090) | 5/280 | 8.1 | 7.6% | coding (32/1494 nt) | ftsY | Signal Recognition Particle (SRP) receptor |
| ? | CP009273 | 3597595 = | 59 (1.020) | coding (9/1494 nt) | ftsY | Signal Recognition Particle (SRP) receptor | |||||
| * | ? | CP009273 | 1200613 = | 73 (1.190) | 4 (0.070) | 4/284 | 8.8 | 5.4% | pseudogene (754/1134 nt) | aaaE | pseudogene, phage terminase protein A family, e14 prophage;Phage or Prophage Related |
| ? | CP009273 | 1200682 = | 70 (1.190) | pseudogene (823/1134 nt) | aaaE | pseudogene, phage terminase protein A family, e14 prophage;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 377125 | NA (NA) | 5 (0.090) | 4/282 | 8.8 | NA | coding (319/366 nt) | insC1 | IS2 repressor TnpA |
| ? | CP009273 | = 377151 | NA (NA) | coding (345/366 nt) | insC1 | IS2 repressor TnpA | |||||
| * | ? | CP009273 | 42179 = | 56 (0.910) | 3 (0.050) | 3/270 | 9.2 | 5.7% | intergenic (‑248/‑224) | caiT/fixA | putative transporter/anaerobic carnitine reduction putative electron transfer flavoprotein subunit |
| ? | CP009273 | 42275 = | 48 (0.860) | intergenic (‑344/‑128) | caiT/fixA | putative transporter/anaerobic carnitine reduction putative electron transfer flavoprotein subunit | |||||
| * | ? | CP009273 | = 3263438 | 64 (1.040) | 5 (0.090) | 3/276 | 9.3 | 7.4% | intergenic (+477/+546) | yhaC/garK | pentapetide repeats‑related protein/glycerate kinase I |
| ? | CP009273 | = 3263555 | 65 (1.140) | intergenic (+594/+429) | yhaC/garK | pentapetide repeats‑related protein/glycerate kinase I | |||||
| * | ? | CP009273 | 1942820 = | 55 (0.900) | 3 (0.050) | 3/278 | 9.4 | 5.5% | coding (70/453 nt) | nudB | dihydroneopterin triphosphate pyrophosphatase |
| ? | CP009273 | 1942866 = | 52 (0.900) | coding (24/453 nt) | nudB | dihydroneopterin triphosphate pyrophosphatase | |||||
| * | ? | CP009273 | 1444048 = | 77 (1.250) | 4 (0.070) | 3/280 | 9.4 | 5.4% | coding (1559/2274 nt) | tynA | tyramine oxidase, copper‑requiring |
| ? | CP009273 | 1444073 = | 66 (1.140) | coding (1534/2274 nt) | tynA | tyramine oxidase, copper‑requiring | |||||
| * | ? | CP009273 | 1424533 = | 83 (1.350) | 3 (0.050) | 3/278 | 9.4 | 3.9% | coding (1228/3363 nt) | stfR | Rac prophage; putative tail fiber protein |
| ? | CP009273 | 1424679 = | 68 (1.180) | coding (1374/3363 nt) | stfR | Rac prophage; putative tail fiber protein | |||||
| * | ? | CP009273 | = 4604387 | 100 (1.630) | 3 (0.050) | 3/282 | 9.5 | 3.2% | noncoding (314/388 nt) | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences |
| ? | CP009273 | = 4604403 | 88 (1.500) | noncoding (330/388 nt) | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | REP352 (repetitive extragenic palindromic) element; contains 8 REP sequences | |||||