New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2096424	NA (NA)	4 (0.120)	4/270	NT	12.5%	noncoding (1/1195 nt)	IS5	repeat region
	?	CP009273	= 2160623	28 (0.810)					intergenic (+113/+160)	yegQ/ogrK	putative peptidase/positive regulator of P2 growth (insertion of P2 ogr gene into the chromosome)

CAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGT  >  CP009273/2096282‑2096570                                                                                                                                               |                                                                                                                                                   aaataaaaTCTCTTTTCTGGTTTGACGGCGCTTACTGCTGAATGCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGATCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATc                                                                                                                                              <  2:106495/145‑1 (MQ=2)       aaTCTCTTTTCTGGTCTTACGGCGTTTACTGCTGAATTCGCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATTGCTCCAGCTGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATc                                                                                                                                              <  1:355640/143‑1 (MQ=11)            ctTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTaa                                                                                                                                         <  1:399454/143‑1 (MQ=34)            ctTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAACCCCTaa                                                                                                                                         <  1:85106/143‑1 (MQ=17)            ctTTGCTGGTCTGACGGCGCTTACCGCTGAATTCACTGTCGGCGAAGCTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATaaa                                                                                                                                   <  2:588347/149‑1 (MQ=255)                tCTTGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGac                                                                                                                               <  2:68064/149‑1 (MQ=255)                        gACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATaaa                                                                                                                       <  2:441150/149‑1 (MQ=255)                         aCGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGAcaca                                                                                                                            >  1:24932/1‑143 (MQ=255)                              gcTTACTGCTGATTTCACTGGCGTCGAAAGTAAGTTGATGATTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCTCCTTCCTTAATCCCTAACATAAATGACACAATaaa                                                                                                                       <  1:340335/143‑1 (MQ=17)                               cTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGCCTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATaaaa                                                                                                                      >  1:475872/1‑143 (MQ=255)                                    tgctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCCGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAACcac                                                                                                           >  2:100287/1‑149 (MQ=255)                                     gctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGcaca                                                                                                          <  2:92316/149‑1 (MQ=255)                                      ctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAATATGATCTCATATCAGGGCCTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAAAAAATACAGaaa                                                                                                               >  1:225481/1‑143 (MQ=17)                                       tgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAgg                                                                                                        >  2:43045/1‑149 (MQ=255)                                          aTTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGcac                                                                                                           >  1:291044/1‑143 (MQ=255)                                              aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCCGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACATAATAAAATCAGAAAGCACAGGAAAtttt                                                                                                 <  2:358529/149‑1 (MQ=255)                                              aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGAGGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGa                                                                                                       >  1:367769/1‑143 (MQ=255)                                                     gCGAAGGTAAGTTGATGACTCATGATGCACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATACAATCAGGGAGCACAGGAAATTTTc                                                                                                <  1:179193/143‑1 (MQ=255)                                                     gCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTc                                                                                                <  1:122413/143‑1 (MQ=255)                                                     gCGAACGTAAGTTGATGACTCATAATGGTCCCCTTTCTATGGCCCCAGATGACAAACAGGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACgg                                                                                          <  2:274040/149‑1 (MQ=21)                                                      cGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCt                                                                                               <  1:572049/143‑1 (MQ=255)                                                          ggTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACg                                                                                           >  1:506369/1‑143 (MQ=255)                                                          ggTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACg                                                                                           >  1:506177/1‑143 (MQ=255)                                                                      aCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGAt                                                                         >  2:459048/1‑149 (MQ=255)                                                                        tCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGGACAGGAAATTTTCTTACGGAATAATCATGTaa                                                                             >  1:212363/1‑143 (MQ=255)                                                                        tCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGGATAATCATGTAAATAttt                                                                       >  2:239574/1‑149 (MQ=255)                                                                                 aCCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATAACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGc                                                                    >  1:276116/1‑143 (MQ=255)                                                                                  cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCAtct                                                             <  2:92965/149‑1 (MQ=255)                                                                                  cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAAACAGGAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCAtct                                                             >  2:463545/1‑149 (MQ=255)                                                                                    cTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCg                                                           <  2:623482/149‑1 (MQ=255)                                                                                                              aTGATCTCATATCAGGGACTTGTTCGCCCTTTCATTATTCCCTAACATAGATGACACAATAAAATCAGCAAGCACAGGAAATTTTCTTACGGAATAATCATGCAAAGATTTTGCTTCAAACCGGAACAGGCGTAAtacacata                                       >  1:297873/1‑136 (MQ=255)                                                                                                                          cAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACttt                     <  2:360410/149‑1 (MQ=255)                                                                                                                            gggACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATACAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCg                   <  2:187554/149‑1 (MQ=255)                                                                                                                            gggACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCg                   <  2:131901/149‑1 (MQ=255)                                                                                                                                     tCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTa          >  2:350916/1‑149 (MQ=255)                                                                                                                                          ccttccttAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTTCGGAATAATCATGTAAAGATTTCGTTTCATCTCGGAACAGGCATAATGTATTAAAAGCATAACGCTTACTTTCGACATATTTAatata     <  2:413001/149‑1 (MQ=255)                                                                                                                                             tccttAATCCCTAACATAAATGACTCAATGGAGGCAGAAGGCACCGTAAGATGTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGt  <  2:622692/149‑1 (MQ=255)                                                                                                                                             tccttAATCCCTAACATAAATGACACAATAAAATCCGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCACAATGTACTAAAAGCATAACGCCTACTTTCGACATATTTAATATATGt  <  2:355905/149‑1 (MQ=255)                                                                                                                                               |                                                                                                                                                   CAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCTTAATCCCTAACATAAATGACACAATAAAATCAGAAAGCACAGGAAATTTTCTTACGGAATAATCATGTAAAGATTTCGCTTCATCTCGGAACAGGCATAATGTACTAAAAGCATAACGCTTACTTTCGACATATTTAATATATGT  >  CP009273/2096282‑2096570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.