New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 2096424	NA (NA)	4 (0.120)	4/270	NT	12.5%	noncoding (1/1195 nt)	IS5	repeat region
	?	CP009273	= 2160623	28 (0.810)					intergenic (+113/+160)	yegQ/ogrK	putative peptidase/positive regulator of P2 growth (insertion of P2 ogr gene into the chromosome)

CCGGGGAAACCACGCGTAATCCCCACGGTAAGTGATTAATTTCGATTATTTTTCCCGGATGGAAAATTCTTAGAAACCGATCACATACAGCTGCATTTATTAAGGTTATCATCCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTACGCGTAATACAATGAAATAAAAGGATTTATTTCTGGTCACGTCCACACATTGACCACATCGACAAAAAAGCCCCTCGA  >  CP009273/2160476‑2160760                                                                                                                                                    |                                                                                                                                          ccGGGGAAACCACGCGTAATCCCCACGGTAAGTGATTAATTTCGATTATTTTTCCCGGATGGAAAATTCTTAGAAACCGATCACATACAGCTGCATTTATTAAGGTTATCATCCGTTTCGCTGAAAAACATAACCCATACAATGCTAGc                                                                                                                                          >  2:358873/1‑149 (MQ=255)        aaCCACGCGTAATCCCCACGGTAAGTGATTAATTTCGATTATTTTTCCCGGATGGAAAATTCTTAGAAACCGATCACATACAGCTGCATTTATTAAGGTTATCATCCGTTTCGCTGAAAAACAAAACCCATAAAATGCTAGCTGTACCa                                                                                                                                   <  2:319624/149‑1 (MQ=255)         aCCACGCGTAATCCCCACGGTAAGTGATTGATTTCGATTATTTTTCCCGGATGGAAAATTCTTAGAAACCGATCACATACAGCTGCATTTATTAAGGTTATCATCCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGggaaggtgc                                                                                                                                  >  2:217605‑M2/1‑140 (MQ=255)          ccACGCGTAATCCCCACGGTAAGTGATTAATTTCGATTATTTTTCCCGGATGGAAAATTCTTAGAAACCGATCACATACAGCTGCATTTATTAAGGTTATCATCCGTTTCGCTGAAAAACATAACCCATAATATGCTAGCTGTACCAgg                                                                                                                                 >  2:547969/1‑149 (MQ=255)          ccACGCGTAATCCCCACGGTAAGTGATTAATTTCGATTATTTTTCCCGGATGGAAAATTCTTAGAAACCGATCACATACAGCTGCATTTATTAAGGTTATCATCCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGggaaggtgcg                                                                                                                                 <  2:9969‑M2/149‑11 (MQ=255)              gcgTAATCCCCACGGTAAGTGATTAATTTCGATTATTTTTCCCGGATGGAAAATTCTTAGAAACCGATCACATACAGCTGCATTTATTAAGGTTATCATCCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAacc                                                                                                                             >  2:127120/1‑149 (MQ=255)               cgTAATCCCCACGGTAAGTGATTAATTTCGATTATTTTTCCCGGATGGAAAATTCTTAGAAACCGATCACATACAGCTGCATTTATTAAGGTTATCATCCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAacca                                                                                                                            >  2:360311/1‑149 (MQ=255)                          cGGCAATTGATTAATTTCGATTATTTTTCCCGGATGGAAAATTCTTATAAACCGATCACATACAACTGCATGTATTAAGGTTATCATCCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCAcctcc                                                                                                                       <  1:239829/143‑1 (MQ=255)                             tAAGTGATTAATTTCGATTATTTTTCCCGGATGGAAAATTCTTAGAAACCGATCACATACAGCTGTATTTATTAAGGTTATCATCCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCtgt                                                                                                              <  2:306553/149‑1 (MQ=255)                             tAAGTGATTAATTTCGATTATTTTTCCCGGATGGAAAATTCTTAGAAACCGATCACATACAGCTGCATTTATTAAGGTTATCATCCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCtgt                                                                                                              <  2:574668/149‑1 (MQ=255)                             tAAGTGATTAATTTCGATCATTTTTCCCGGATGGAAAATTCTTAGAAACCGATCACATACAGCTGCATTTATTAAGGTTATCATCCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCtgt                                                                                                              <  2:182777/149‑1 (MQ=255)                                         ttCGATTATTTTTCCCGGATGGAAAATTCTTAGAAACCGATCACATACAGCTGCATTTATTAAGGTTATCATCCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAAtc                                                                                                        >  1:135561/1‑143 (MQ=255)                                                 tttttCCCGGATGGAAAATTCTTAGAAACCGATCACATACAGCTGCATTTATTAAGGTTATCATCCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGc                                                                                          <  2:616893/149‑1 (MQ=255)                                                             ggAAAATTCTTAGAAACCGATCACATACAGCTGCATTTATTAAGGTTATCATCCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTAtta                                                                                    >  1:557354/1‑142 (MQ=255)                                                                  aTTCTTAGAAACCGATCACATACAGCTGCATTTATTAAGGTTATCATCCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTACGCGTaa                                                                         <  2:608692/149‑1 (MQ=255)                                                                  aTTCTTAGAAACCGATCACATACAGCTGCATTTATTAAGGTTATCATCCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTCTACTCTCCCTTACACGGGCTTAttttttcgtcgtaa                                                                         >  2:600710/1‑141 (MQ=255)                                                                    tCTTAGAAACCGATCACATACAGCTGCATTTATTAAGGTTATCATCCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTAcgc                                                                             <  1:337241/143‑1 (MQ=255)                                                                     cTTAGAAACCGATCACATACAGCTGCATTTATTAAGGTTATCATCCGTTTCGCTGAAAAACATAACCCATAAACTGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTAcgcg                                                                            <  1:493491/143‑1 (MQ=255)                                                                             ccGATTACATACAGCTGCATTTATTAAGGTTATCATCCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcat                                                              >  2:143034‑M2/1‑72 (MQ=255)                                                                                  cacaTACAGCTGCATTTATTAAGGTTATCATCCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTACGCGTAATACAATGaaa                                                               <  1:401289/143‑1 (MQ=255)                                                                                     aTACAGCTGCATTTATTAAGGTTATCATCCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTACGCGTAATACAATGAAATAAAAGGat                                                      >  2:486581/1‑149 (MQ=255)                                                                                             gCATTTATTAAGGTTATCATCCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTACGCGTAATACAATGAAATAAAAGGattt                                                    <  1:114080/143‑1 (MQ=255)                                                                                              cATTTATTAAGGTTATCATCCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGggaaggtgcgaacaagtccctgatatgagatcatgtttgtcatctggagccatagaacagggttcatcatgagtcgtcaacttacctt                                                   <  1:25713‑M2/143‑89 (MQ=255)                                                                                                  tattaAGGTTATCATCCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTACGCGTAATACAATGAAATAAAAGGATTTATTTCTGGTCa                                         <  2:126387/149‑1 (MQ=255)                                                                                                   attaAGGTTATTATTCGTTTCGGTGAAAATCATAACTCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCGCCCTTACACGGGCTTATTTTTTACGCGTAATACAATGAAATAAAAGGATTTATTTCTGGTCAc                                        <  2:11861/149‑1 (MQ=255)                                                                                                    ttaAGGTTATCATCCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTACGCGTAATACAATGAAATAAAAGGATTTATTTCTg                                             <  1:319002/143‑1 (MQ=255)                                                                                                        ggTTATCATCCGTTACGCTGAAAAAGATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTACCTTACACGGGCTCATTTTTTACGCGTAATACAATGAGATAAAAGGATTTATTTCTGGTCACGTCca                                   <  2:387834/149‑1 (MQ=255)                                                                                                         gTTATCATCCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTACGCGTAATACAATGAAATAAAAGGATTTATTTCTGGTCACGTCcac                                  >  2:136216/1‑149 (MQ=255)                                                                                                                         cTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTACGCGTAATACAATGAAATAAAAGGATTTATTTCTGGTCACGTCCACACATTGACCACATCGa                  <  2:598585/149‑1 (MQ=255)                                                                                                                              aaaCATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTACGCGTAATACAATGAAATAAAAGGATTTATTTCTGGTCACGTCCACACATTGACCACATCGACaaaa             <  2:60386/149‑1 (MQ=255)                                                                                                                                  aTAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTACGCGTAATACAATGAAATAAAAGGATTTATTTCTGGTCCCGTCCACACATTGACCACATCGACaa               >  1:479021/1‑143 (MQ=255)                                                                                                                                       ccATAAAATGCTAGCCGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTACGCGTAATACAATGAAATAAAAGGATTTATTTCTGGTCACGTCCACACATTGACCACATCGACAAAAAAg          <  1:317676/143‑1 (MQ=255)                                                                                                                                         aTAAAATGCTAGATGTACCACGAACCACCTCCTTAGCCTGTGTACTCTCCCTTACACGGGCTTATTTCTCCCTCTTAATAAAATCCACCTGAAGTAGTGATTGCTGGTCACGTCCACACATTGACCACATCGACAAAAAAGCCCCTCGa  <  2:150953/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                          CCGGGGAAACCACGCGTAATCCCCACGGTAAGTGATTAATTTCGATTATTTTTCCCGGATGGAAAATTCTTAGAAACCGATCACATACAGCTGCATTTATTAAGGTTATCATCCGTTTCGCTGAAAAACATAACCCATAAAATGCTAGCTGTACCAGGAACCACCTCCTTAGCCTGTGTAATCTCCCTTACACGGGCTTATTTTTTACGCGTAATACAATGAAATAAAAGGATTTATTTCTGGTCACGTCCACACATTGACCACATCGACAAAAAAGCCCCTCGA  >  CP009273/2160476‑2160760

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.