| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 4602145 | 27 (0.780) | 3 (0.090) | 4/248 | NT | 10.2% | intergenic (+39/‑83) | ytjA/yjjU | uncharacterized protein/putative patatin‑like family phospholipase |
| ? | CP009273 | = 4602148 | 28 (0.880) | intergenic (+42/‑80) | ytjA/yjjU | uncharacterized protein/putative patatin‑like family phospholipase | |||||
TGGCCGGTACCGCTGCAGGCGCAGCTAAAATTGTCTTTGTCGTCGGGATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGAATACCTGTAACGCTTGGTAATATTGCGCCGTTGTCGCTAAGGCCG > CP009273/4602012‑4602284 | tGGCCGGTACCGCTGCAGGCGCAGCTAAAATTGTCTTTGTCGTCGGGATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCgctggactg > 1:473151‑M1/1‑134 (MQ=255) ggTACCGCTGCAGGCGCAGCTAAAATTGTCTTTGTCGGCGGGATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCTAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCGCTggactggcttt > 1:299833‑M2/1‑132 (MQ=255) gTACCGCTGCAGGCGCAGCTAAAATTGTCTTTGTCGTCGGGATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGtt < 2:548022/149‑1 (MQ=255) gCTGAAGGCGCAGCTTAAAATGTCTTTGTCGTTGGGATTATTCTGTTCCTGGTGAGTTTGTTCATGCGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGc < 2:481094/149‑1 (MQ=255) aGGCGCAGCTAAAATTGTCTTTGTCGTCGGGATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAg > 1:7692/1‑143 (MQ=255) gCTAAAATTGTCTTTGTCGTCGGGATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAGAtt > 2:143077/1‑149 (MQ=255) tAAAATTGTCTTTGTCGTCGGGATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAGGAAGATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGc > 2:189366/1‑149 (MQ=255) aaaTTGTCTTTGTCGTCGGGATTATTCTGTTCCTTGTGAGGTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTTCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATaaa < 1:136830/143‑1 (MQ=255) gggATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTc < 2:287579/149‑1 (MQ=255) gggATTATGCTGTTCCTGTTGAGGTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTc < 2:143976/149‑1 (MQ=255) ggATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCTGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCAtt > 1:33280/1‑143 (MQ=255) ggtgatggtgttcttggTGGGTTTGTTCATGGGGCGAAAGCGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCGCTggactggctttggataaaattttcttaatggtctgaaatctagggtcgttttcggccc > 2:25956‑M2/9‑91 (MQ=255) attattCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCt < 1:403547/143‑1 (MQ=255) attattCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTcaca > 2:629567/1‑149 (MQ=255) ttattCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCccaa > 2:517264/1‑149 (MQ=255) ttattCTGTGCCTGGTGAGTTTGCTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCacaa < 2:144604/149‑1 (MQ=255) attCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCTGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCacaaca < 2:37867/149‑1 (MQ=255) tCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCGCTggactggctttggataaaattttcttaatggtctgaaatctagggtcgttttcggcccatgaac > 2:525785‑M2/1‑85 (MQ=255) gTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCCACACAAAAACa > 1:507443/1‑143 (MQ=255) gTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAGAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTAACAACAAAAACATGAAGGCaga > 2:272754/1‑149 (MQ=255) tttGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGAGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCggag > 2:491159/1‑149 (MQ=255) gTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCagcggactggctttggataaaattttcttaatggtctgaaatctagggtcgttttcggcccatgaacaaactcaccaggaacaga > 2:525785‑M1/1‑64 (MQ=255) ttaaTGGGCCGAAAACGACCCTAGATTTCAGTCCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTgg < 2:629292/146‑1 (MQ=255) gggCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCagcggactggctttggataaaattttcttaatggtctgaaatctagggtcgctttcgccccatgaacaaacccaccaagaacaccatcacc > 2:25956‑M1/1‑58 (MQ=255) aaaaCGACCCTAGATTTCAGACCATCAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGCGGGGCAg > 1:349673/1‑143 (MQ=255) cGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGaa < 1:570171/143‑1 (MQ=255) ccTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGAATAcc > 1:81621/1‑143 (MQ=255) gACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGAATACCTGTAACGCTTg < 1:86958/143‑1 (MQ=255) tAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTGTGTCATGCTTTCACAACAAAAACAGGAAGGCACAGGTGGGGCAGCGAATACCTGTAACGCTTGGTAata < 1:235285/143‑1 (MQ=255) aTCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTTTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGAATACCTGTAACGCTTGGTAATATTGCGCCGTTGTCGCTaa < 2:414620/149‑1 (MQ=255) aaaGCCAGTCCagcggactggctttggataaaattttcttaatggtctgaaatctagggtcgttttaggcccatgaacaaactcaccaggaacagaataatcccgccgacaaagacaattttagctgcgcctgcagcggtacc > 1:299833‑M1/1‑11 (MQ=255) aaaGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGAATACCTGTAACGCTTGGTAATATTGCGCCGTTGTCGCTAAGGcc > 2:171366/1‑149 (MQ=255) aaGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGAAGAGGTGGGGCAGCGAATACCTGTAACCCTTGGAAATATTGAGCCGTTGTCGCTAAGGCCg > 2:446286/1‑149 (MQ=255) aGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGAATACCTGTAACGCTTGGTAATATTGCGCCGTTGTCGCTaa < 1:128172/143‑1 (MQ=255) cAGTCCAGCggactggctttggataaaattttcttaatggtctgaaatctagggtcgttttcggcccatgaacaaactcaccaggaacagaataatcccgacgacaaagacaattttagctgcgcctgcagcggtaccggcca > 1:473151‑M2/1‑9 (MQ=255) gTCCGGCGGGCTGGCTTTTGCGGTTTGAGCGAATAATAAGTTGCGTTCCTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGAATACCTGTAACGCTTGGTAATATTGCGCCGTTGTCGCTAAGGCCg < 1:411963/143‑1 (MQ=255) | TGGCCGGTACCGCTGCAGGCGCAGCTAAAATTGTCTTTGTCGTCGGGATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGAATACCTGTAACGCTTGGTAATATTGCGCCGTTGTCGCTAAGGCCG > CP009273/4602012‑4602284 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |