New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 4602145	27 (0.780)	3 (0.090)	4/248	NT	10.2%	intergenic (+39/‑83)	ytjA/yjjU	uncharacterized protein/putative patatin‑like family phospholipase
	?	CP009273	= 4602148	28 (0.880)					intergenic (+42/‑80)	ytjA/yjjU	uncharacterized protein/putative patatin‑like family phospholipase

GGTACCGCTGCAGGCGCAGCTAAAATTGTCTTTGTCGTCGGGATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGAATACCTGTAACGCTTGGTAATATTGCGCCGTTGTCGCTAAGGCCG  >  CP009273/4602017‑4602284                                                                                                                                    |                                                                                                                                         ggTACCGCTGCAGGCGCAGCTAAAATTGTCTTTGTCGGCGGGATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCTAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCGCTggactggcttt                                                                                                                               >  1:299833‑M2/1‑132 (MQ=255)  gTACCGCTGCAGGCGCAGCTAAAATTGTCTTTGTCGTCGGGATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGtt                                                                                                                        <  2:548022/149‑1 (MQ=255)       gCTGAAGGCGCAGCTTAAAATGTCTTTGTCGTTGGGATTATTCTGTTCCTGGTGAGTTTGTTCATGCGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGc                                                                                                                   <  2:481094/149‑1 (MQ=255)            aGGCGCAGCTAAAATTGTCTTTGTCGTCGGGATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAg                                                                                                                    >  1:7692/1‑143 (MQ=255)                   gCTAAAATTGTCTTTGTCGTCGGGATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAGAtt                                                                                                       >  2:143077/1‑149 (MQ=255)                     tAAAATTGTCTTTGTCGTCGGGATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAGGAAGATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGc                                                                                                     >  2:189366/1‑149 (MQ=255)                       aaaTTGTCTTTGTCGTCGGGATTATTCTGTTCCTTGTGAGGTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTTCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATaaa                                                                                                         <  1:136830/143‑1 (MQ=255)                                        gggATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTc                                                                                  <  2:287579/149‑1 (MQ=255)                                        gggATTATGCTGTTCCTGTTGAGGTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTc                                                                                  <  2:143976/149‑1 (MQ=255)                                         ggATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCTGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCAtt                                                                                       >  1:33280/1‑143 (MQ=255)                                          ggtgatggtgttcttggTGGGTTTGTTCATGGGGCGAAAGCGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCGCTggactggctttggataaaattttcttaatggtctgaaatctagggtcgttttcggccc                                                                                >  2:25956‑M2/9‑91 (MQ=255)                                           attattCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCt                                                                                     <  1:403547/143‑1 (MQ=255)                                           attattCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTcaca                                                                               >  2:629567/1‑149 (MQ=255)                                            ttattCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCccaa                                                                              >  2:517264/1‑149 (MQ=255)                                            ttattCTGTGCCTGGTGAGTTTGCTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCacaa                                                                              <  2:144604/149‑1 (MQ=255)                                              attCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCTGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCacaaca                                                                            <  2:37867/149‑1 (MQ=255)                                                tCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCGCTggactggctttggataaaattttcttaatggtctgaaatctagggtcgttttcggcccatgaac                                                                          >  2:525785‑M2/1‑85 (MQ=255)                                                          gTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCCACACAAAAACa                                                                      >  1:507443/1‑143 (MQ=255)                                                              gTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAGAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTAACAACAAAAACATGAAGGCaga                                                            >  2:272754/1‑149 (MQ=255)                                                               tttGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGAGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCggag                                                           >  2:491159/1‑149 (MQ=255)                                                                   ttaaTGGGCCGAAAACGACCCTAGATTTCAGTCCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTgg                                                       <  2:629292/146‑1 (MQ=255)                                                                              aaaaCGACCCTAGATTTCAGACCATCAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGCGGGGCAg                                                  >  1:349673/1‑143 (MQ=255)                                                                                  cGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGaa                                              <  1:570171/143‑1 (MQ=255)                                                                                      ccTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGAATAcc                                          >  1:81621/1‑143 (MQ=255)                                                                                                 gACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGAATACCTGTAACGCTTg                               <  1:86958/143‑1 (MQ=255)                                                                                                       tAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTGTGTCATGCTTTCACAACAAAAACAGGAAGGCACAGGTGGGGCAGCGAATACCTGTAACGCTTGGTAata                         <  1:235285/143‑1 (MQ=255)                                                                                                                   aTCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTTTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGAATACCTGTAACGCTTGGTAATATTGCGCCGTTGTCGCTaa       <  2:414620/149‑1 (MQ=255)                                                                                                                       aaaGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGAATACCTGTAACGCTTGGTAATATTGCGCCGTTGTCGCTAAGGcc   >  2:171366/1‑149 (MQ=255)                                                                                                                        aaGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGAAGAGGTGGGGCAGCGAATACCTGTAACCCTTGGAAATATTGAGCCGTTGTCGCTAAGGCCg  >  2:446286/1‑149 (MQ=255)                                                                                                                         aGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGAATACCTGTAACGCTTGGTAATATTGCGCCGTTGTCGCTaa       <  1:128172/143‑1 (MQ=255)                                                                                                                            cAGTCCAGCggactggctttggataaaattttcttaatggtctgaaatctagggtcgttttcggcccatgaacaaactcaccaggaacagaataatcccgacgacaaagacaattttagctgcgcctgcagcggtaccggcca    >  1:473151‑M2/1‑9 (MQ=255)                                                                                                                              gTCCGGCGGGCTGGCTTTTGCGGTTTGAGCGAATAATAAGTTGCGTTCCTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGAATACCTGTAACGCTTGGTAATATTGCGCCGTTGTCGCTAAGGCCg  <  1:411963/143‑1 (MQ=255)                                                                                                                                    |                                                                                                                                         GGTACCGCTGCAGGCGCAGCTAAAATTGTCTTTGTCGTCGGGATTATTCTGTTCCTGGTGAGTTTGTTCATGGGCCGAAAACGACCCTAGATTTCAGACCATTAAGAAAATTTTATCCAAAGCCAGTCCAGCGGACTGGCTTTTGCGGTTTTAGCGAATAATAAATTGCGTTACTTTGTCATTCTTTCACAACAAAAACAGGAAGGCAGAGGTGGGGCAGCGAATACCTGTAACGCTTGGTAATATTGCGCCGTTGTCGCTAAGGCCG  >  CP009273/4602017‑4602284

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.